An intronic (A/U)GGG repeat enhances the splicing of an alternative intron of the chicken beta-tropomyosin pre-mRNA

Nucleic Acids Res. 1995 Sep 11;23(17):3501-7. doi: 10.1093/nar/23.17.3501.

Abstract

Computer analysis of human intron sequences have revealed a 50 nucleotide (nt) GC-rich region downstream of the 5' splice site; the trinucleotide GGG occurs almost four times as frequently as it would in a random sequence. The 5' part of a beta-tropomyosin intron exhibits six repetitions of the motif (A/U)GGG. In order to test whether these motifs play a role in the splicing process we have mutated some or all of them. Mutated RNAs show a lower in vitro splicing efficiency when compared with the wild-type, especially when all six motifs are mutated (> 70% inhibition). Assembly of the spliceosome complex B and, to a lesser extent, of the pre-spliceosome complex A also appears to be strongly affected by this mutation. A 55 kDa protein within HeLa cell nuclear extract is efficiently cross-linked to the G-rich region. This protein is present in the splicing complexes and its cross-linking to the pre-mRNA requires the presence of one or several snRNP. Altogether our results suggest that the G-rich sequences present in the 5' part of introns may act as an enhancer of the splicing reaction at the level of spliceosome assembly.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Alternative Splicing*
  • Animals
  • Base Sequence
  • Chickens
  • Introns*
  • Molecular Sequence Data
  • Oligodeoxyribonucleotides / chemistry
  • RNA Precursors / metabolism*
  • RNA, Messenger / metabolism
  • RNA-Binding Proteins / metabolism
  • Repetitive Sequences, Nucleic Acid
  • Spliceosomes / chemistry
  • Spliceosomes / metabolism*
  • Structure-Activity Relationship
  • Tropomyosin / genetics*

Substances

  • Oligodeoxyribonucleotides
  • RNA Precursors
  • RNA, Messenger
  • RNA-Binding Proteins
  • Tropomyosin