Mutational analysis of the 3'-terminal extra-cistronic region of poliovirus RNA: secondary structure is not the only requirement for minus strand RNA replication

FEBS Lett. 1995 Nov 6;374(3):327-32. doi: 10.1016/0014-5793(95)01127-z.

Abstract

A series of mutations were introduced in the 3'-terminal untranslated region (3'-UTR) of full-length infectious poliovirus cDNA clones, and following transfection of COS-1 cells the ability of these constructs to generate viable viral particles and/or to support viral RNA synthesis was assayed. Substitution of the 3'-UTR of poliovirus RNA with the equivalent sequences of HAV RNA abrogated viral RNA replication, whereas the introduction of extended 'foreign' sequences between the open reading frame and the 3'-UTR was well tolerated. Point mutation that either destabilized the stem-and-loop structure or altered the sequence of the loop in domain 'Y' (nomenclature as per Pilipenko et al., [Nuclei Acids Res. 20 (1992) 1739-1745]) abolished both the infectivity and viral RNA synthesis. These were not restored by compensatory mutation that reconstructed the native secondary structure of this domain, suggesting that the secondary/tertiary folding of the 3'-UTR is not the only determinant for template recognition at initiation of RNA synthesis, but rather that a specific primary sequence is indeed required.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Base Sequence
  • Cell Line
  • Deoxyribonucleases, Type II Site-Specific / metabolism
  • Genes
  • Molecular Sequence Data
  • Mutagenesis*
  • Nucleic Acid Conformation*
  • Poliovirus / genetics*
  • RNA, Viral / biosynthesis*
  • RNA, Viral / chemistry*
  • RNA, Viral / genetics
  • Transfection

Substances

  • RNA, Viral
  • endodeoxyribonuclease NaeI
  • CTCGAG-specific type II deoxyribonucleases
  • Deoxyribonucleases, Type II Site-Specific