Analysis of poly(A)+RNA patterns in human tissues

FEBS Lett. 1993 Apr 19;321(1):98-101. doi: 10.1016/0014-5793(93)80629-9.

Abstract

A novel method for analysing and comparing the relative amounts of the most abundant (higher than 0.1% abundance) individual mRNAs present in different poly(A)+RNA preparations has been developed. This method is based on the synthesis of short (10-30 nucleotide) cDNA termination products, by reverse transcription of poly(A)+RNA primed with a 5'-labeled oligonucleotide. A set of 30 different oligonucleotides are used as primers in separate reactions, their length and sequences having been chosen to provide more than a 90% probability of initiating synthesis from any individual RNA present in the poly(A)+RNA. Each primer produces about 10-60 bands per track, following polyacrylamide gel electrophoresis under denaturing conditions. Data presented reveals poly(A)+RNA pattern differences for a number of human tissues and identifies changes in RNA patterns between normal tissues and neoplastic human tumors (myoma of the uterus) from several individuals.

MeSH terms

  • Base Sequence
  • Female
  • Gene Expression
  • Humans
  • Molecular Sequence Data
  • Myoma / chemistry
  • Myometrium / chemistry
  • Oligodeoxyribonucleotides / chemistry
  • RNA, Messenger / genetics*
  • RNA, Neoplasm / genetics
  • RNA-Directed DNA Polymerase / metabolism

Substances

  • Oligodeoxyribonucleotides
  • RNA, Messenger
  • RNA, Neoplasm
  • RNA-Directed DNA Polymerase