A sequence-specific single-strand DNA binding protein that contacts repressor sequences in the human GM-CSF promoter

Nucleic Acids Res. 1994 Oct 11;22(20):4276-83. doi: 10.1093/nar/22.20.4276.

Abstract

NF-GMb is a nuclear factor that binds to the proximal promoter of the human granulocyte-macrophage colony stimulating factor (GM-CSF) gene. NF-GMb has a subunit molecular weight of 22 kDa, is constitutively expressed in embryonic fibroblasts and binds to sequences within the adjacent CK-1 and CK-2 elements (CK-1/CK-2 region), located at approximately -100 in the GM-CSF gene promoter. These elements are conserved in haemopoietic growth factor (HGF) genes. NF-GMb binding requires the presence of repeated 5'CAGG3' sequences that overlap the binding sites for positive activators. Surprisingly, NF-GMb was found to bind solely to single-strand DNA, namely the non-coding strand of the GM-CSF CK-1/CK-2 region. NF-GMb may belong to a family of single-strand DNA binding (ssdb) proteins that have 5'CAGG3' sequences within their binding sites. Functional analysis of the proximal GM-CSF promoter revealed that sequences in the -114 to -79 region of the promoter containing the NF-GMb binding sites had no intrinsic activity in fibroblasts but could, however, repress tumour necrosis factor-alpha (TNF-alpha) inducible expression directed by downstream promoter sequences (-65 to -31). Subsequent mutation analysis showed that sequences involved in repression correlated with those required for NF-GMb binding.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Base Sequence
  • Binding Sites
  • Cell Line
  • DNA, Single-Stranded / metabolism
  • DNA-Binding Proteins / metabolism*
  • Embryo, Mammalian
  • Granulocyte-Macrophage Colony-Stimulating Factor / genetics*
  • Humans
  • Lung
  • Molecular Sequence Data
  • Mutagenesis
  • Plasmids
  • Promoter Regions, Genetic*
  • Repetitive Sequences, Nucleic Acid
  • Repressor Proteins / genetics*
  • Transfection
  • Tumor Necrosis Factor-alpha / pharmacology

Substances

  • DNA, Single-Stranded
  • DNA-Binding Proteins
  • Repressor Proteins
  • Tumor Necrosis Factor-alpha
  • Granulocyte-Macrophage Colony-Stimulating Factor