Nucleotide sequence comparison of the VP8* gene of rotaviruses possessing the AU-1 gene 4 allele

J Gen Virol. 1993 Aug:74 ( Pt 8):1709-13. doi: 10.1099/0022-1317-74-8-1709.

Abstract

Of the five currently recognized alleles of the human rotavirus VP4 gene, the AU-1 allele has captured attention because of its possible non-human origin. The 5' 750 nucleotide region of the VP4 gene, encoding the VP8* fragment [amino acids (aa) 1 to 241] and the connecting peptide (aa 242 to 247), from 13 human and two feline rotavirus strains possessing the AU-1 allele was highly conserved both at the nucleotide sequence (93.8 to 99.7% identity) and amino acid level (95.5 to 100% identity) irrespective of the year and the place of isolation or of the host species from which these viruses were isolated. This is consistent with the hypothesis that the AU-1 allele of the VP4 gene has been maintained in both human and feline rotavirus gene pools.

Publication types

  • Comparative Study
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Alleles
  • Amino Acid Sequence
  • Animals
  • Base Sequence
  • Capsid / genetics*
  • Capsid Proteins*
  • Cats
  • Conserved Sequence / genetics
  • Genes, Viral / genetics*
  • Humans
  • Molecular Sequence Data
  • Rotavirus / genetics*
  • Sequence Homology, Amino Acid

Substances

  • Capsid Proteins
  • VP4 protein, Rotavirus

Associated data

  • GENBANK/D14613
  • GENBANK/D14614
  • GENBANK/D14615
  • GENBANK/D14616
  • GENBANK/D14617
  • GENBANK/D14618
  • GENBANK/D14619
  • GENBANK/D14620
  • GENBANK/D14621
  • GENBANK/D14622
  • GENBANK/D14623
  • GENBANK/D14624