A tandem repeat of the SPKK peptide motif induces psi-type DNA structures at alternating AT sequences

FEBS Lett. 1993 Jun 14;324(2):181-4. doi: 10.1016/0014-5793(93)81389-h.

Abstract

The interaction between a tandem repeat of the SPKK peptide motif and calf thymus DNA or several polynucleotides has been investigated by circular dichroism. The octapeptide SPKKSPKK does not induce any important changes in the CD spectra of the polynucleotides poly(dG).poly(dC), poly(dG-dC).poly(dG-dC) and poly(dA).poly(dT) while the spectrum of calf thymus DNA is slightly modified. Binding of this basic peptide to the alternating copolymer poly(dA-dT).poly(dA-dT) results in a marked psi-type condensation in a manner similar to that induced by the entire C-terminal domain of histone H1.

Publication types

  • Comparative Study
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Circular Dichroism
  • DNA / drug effects*
  • DNA / metabolism
  • DNA-Binding Proteins / pharmacology*
  • Molecular Sequence Data
  • Nucleic Acid Conformation / drug effects
  • Oligopeptides / pharmacology*
  • Poly dA-dT / chemistry*
  • Poly dA-dT / metabolism
  • Polydeoxyribonucleotides / chemistry
  • Polydeoxyribonucleotides / metabolism
  • Repetitive Sequences, Nucleic Acid

Substances

  • DNA-Binding Proteins
  • Oligopeptides
  • Polydeoxyribonucleotides
  • seryl-prolyl-lysyl-lysine
  • Poly dA-dT
  • DNA