Comparative study of conventional and novel strategies for the detection of hepatitis C virus RNA in serum: amplicor, branched-DNA, NASBA and in-house PCR

J Virol Methods. 1995 Aug;54(2-3):159-71. doi: 10.1016/0166-0934(95)00037-u.

Abstract

The aim of this study was to compare the sensitivity and specificity of conventional procedures (in-house one-stage polymerase chain reaction (PCR) and in-house nested PCR) and of new technologies (rTth DNA polymerase (Amplicor), branched-DNA, NASBA (nucleic acid amplification system)) for the qualitative detection of hepatitis C virus (HCV) RNA in serum of HCV-infected individuals. Serum samples from 37 anti-HCV-positive individuals (15 with a normal alanine aminotransferase (ALT) level, 22 with an elevated ALT level) and 10 anti-HCV-negative individuals as negative controls were studied. A second panel, including 9 diluted serum samples (from 1/10 to 1/100,000) was constituted to establish the differences of sensitivity of the 5 procedures with small quantities of HCV RNA in the serum. The anti-HCV-positive individuals with elevated ALT gave positive results with all 5 procedures. In patients with a normal ALT level, the assays with the highest sensitivity were Amplicor, NASBA and nested RT-PCR, followed by one-stage RT-PCR, then branched-DNA. One false-positive result was observed with Amplicor, and two with in-house nested PCR. On diluted samples, Amplicor, NASBA and nested PCR appeared more sensitive than one-stage PCR and branched-DNA. It is concluded that new procedures have satisfactory sensitivity and specificity and could advantageously replace the conventional PCR procedures for the routine qualitative detection of serum HCV RNA.

Publication types

  • Comparative Study

MeSH terms

  • Base Sequence
  • DNA Primers
  • DNA, Viral
  • Hepacivirus / genetics
  • Hepacivirus / isolation & purification*
  • Hepatitis C / blood
  • Hepatitis C / diagnosis
  • Hepatitis C / virology*
  • Humans
  • Molecular Sequence Data
  • Nucleic Acid Amplification Techniques*
  • Polymerase Chain Reaction / methods*
  • RNA, Viral / blood*
  • Reagent Kits, Diagnostic
  • Reproducibility of Results
  • Sensitivity and Specificity

Substances

  • DNA Primers
  • DNA, Viral
  • RNA, Viral
  • Reagent Kits, Diagnostic