Use of a novel mutagenesis strategy, optimized residue substitution, to decrease the off-rate of an anti-gp120 antibody

Mol Immunol. 1995 Oct;32(14-15):1065-72. doi: 10.1016/0161-5890(95)00079-8.

Abstract

We have developed a novel strategy to decrease the antibody:antigen off-rate which we call optimized residue substitution. This strategy employs alanine substitution to first identify residues non-optimal for binding, as evidenced by a decrease in off-rate upon alanine replacement. These positions are then individually randomized to all amino acids, and the best replacement for each position determined. Finally, a construct which combines all optimized substitutions is generated and evaluated. We applied this strategy to the heavy chain CDR3 of P5Q, a scFv antibody which recognizes an epitope on the V3 loop of HIV gp120. We identified two amino acid substitutions that together decrease the off-rate by nearly ten-fold. The contributions by the two substitutions were near additive, indicative of independent affects on binding. We suggest that this strategy can be generalized to strengthen protein:ligand and protein:protein interactions in other systems.

MeSH terms

  • Alanine / genetics
  • Amino Acid Sequence
  • Antibody Affinity*
  • Base Sequence
  • Binding Sites, Antibody
  • Binding, Competitive / immunology
  • HIV Antibodies / biosynthesis*
  • HIV Antibodies / genetics*
  • HIV Envelope Protein gp120 / genetics*
  • HIV Envelope Protein gp120 / immunology*
  • Immunoglobulin Heavy Chains / chemistry
  • Immunoglobulin Heavy Chains / genetics
  • Immunoglobulin Variable Region / chemistry
  • Immunoglobulin Variable Region / genetics
  • Molecular Sequence Data
  • Mutagenesis, Insertional / immunology*

Substances

  • HIV Antibodies
  • HIV Envelope Protein gp120
  • Immunoglobulin Heavy Chains
  • Immunoglobulin Variable Region
  • Alanine