Identification and DNA typing of two Cw7 alleles (Cw*0702 and Cw*0704) in Japanese, with the corrected sequence of Cw*0702

Hum Immunol. 1996 Jan;45(1):52-8. doi: 10.1016/0198-8859(95)00150-6.

Abstract

Two alleles encoding HLA-Cw7 antigens, tentatively called C7J1 and C7J2, have been identified in Japanese using a PCR-SSCP method. The nucleotide sequence of full-length C7J1 cDNAs showed a high degree of homology to the reported Cw*0702 sequence except in exon 1. We then resequenced the allele carried by the cell line JY in which Cw*0702 was first identified, according to a request from the WHO Nomenclature Committee. The results revealed complete identity between the corrected Cw*0702 sequence and the C7J1 sequence. On the other hand, the C7J2 sequence was completely identical to the reported Cw*0704 sequence. Sequences specific for Cw*0702 and Cw*0704 were confirmed using PCR-RFLP and PCR-SSO methods. Moreover, association analysis with other HLA locus alleles showed positive associations of Cw*0702 with HLA-B7, -B39, and -B67 and of Cw*0704 with HLA-B70 in Japanese.

MeSH terms

  • Alleles*
  • Amino Acid Sequence
  • Base Sequence
  • DNA Primers
  • HLA-C Antigens / genetics*
  • Histocompatibility Testing / methods*
  • Humans
  • Introns / immunology
  • Japan
  • Molecular Sequence Data
  • Polymerase Chain Reaction
  • Polymorphism, Restriction Fragment Length
  • Polymorphism, Single-Stranded Conformational
  • Protein Biosynthesis / immunology
  • Sequence Analysis, DNA

Substances

  • DNA Primers
  • HLA-C Antigens
  • HLA-C*70 antigen

Associated data

  • GENBANK/D38526
  • GENBANK/D49552
  • GENBANK/D49819
  • GENBANK/D64153