Ras-catalyzed hydrolysis of GTP: a new perspective from model studies

Proc Natl Acad Sci U S A. 1996 Aug 6;93(16):8160-6. doi: 10.1073/pnas.93.16.8160.

Abstract

Despite the biological and medical importance of signal transduction via Ras proteins and despite considerable kinetic and structural studies of wild-type and mutant Ras proteins, the mechanism of Ras-catalyzed GTP hydrolysis remains controversial. We take a different approach to this problem: the uncatalyzed hydrolysis of GTP is analyzed, and the understanding derived is applied to the Ras-catalyzed reaction. Evaluation of previous mechanistic proposals from this chemical perspective suggests that proton abstraction from the attacking water by a general base and stabilization of charge development on the gamma-phosphoryl oxygen atoms would not be catalytic. Rather, this analysis focuses attention on the GDP leaving group, including the beta-gamma bridge oxygen of GTP, the atom that undergoes the largest change in charge in going from the ground state to the transition state. This leads to a new catalytic proposal in which a hydrogen bond from the backbone amide of Gly-13 to this bridge oxygen is strengthened in the transition state relative to the ground state, within an active site that provides a template complementary to the transition state. Strengthened transition state interactions of the active site lysine, Lys-16, with the beta-nonbridging phosphoryl oxygens and a network of interactions that positions the nucleophilic water molecule and gamma-phosphoryl group with respect to one another may also contribute to catalysis. It is speculated that a significant fraction of the GAP-activated GTPase activity of Ras arises from an additional interaction of the beta-gamma bridge oxygen with an Arg side chain that is provided in trans by GAP. The conclusions for Ras and related G proteins are expected to apply more widely to other enzymes that catalyze phosphoryl (-PO(3)2-) transfer, including kinases and phosphatases.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, P.H.S.
  • Review

MeSH terms

  • Amino Acid Sequence
  • Binding Sites
  • Catalysis
  • GTP Phosphohydrolases / chemistry*
  • GTP-Binding Proteins / chemistry*
  • GTPase-Activating Proteins
  • Glycine / chemistry
  • Guanosine Diphosphate / chemistry
  • Guanosine Triphosphate / chemistry*
  • Hydrogen Bonding
  • Hydrolysis
  • Models, Molecular
  • Molecular Sequence Data
  • Phosphates / chemistry
  • Proteins / physiology
  • Proto-Oncogene Proteins p21(ras) / chemistry*
  • Structure-Activity Relationship
  • ras GTPase-Activating Proteins

Substances

  • GTPase-Activating Proteins
  • Phosphates
  • Proteins
  • ras GTPase-Activating Proteins
  • Guanosine Diphosphate
  • Guanosine Triphosphate
  • GTP Phosphohydrolases
  • GTP-Binding Proteins
  • Proto-Oncogene Proteins p21(ras)
  • Glycine