Polyadenylylated nuclear RNA encoded by Kaposi sarcoma-associated herpesvirus

Proc Natl Acad Sci U S A. 1996 Oct 15;93(21):11883-8. doi: 10.1073/pnas.93.21.11883.

Abstract

A newly recognized gamma herpesvirus known as Kaposi sarcoma-associated herpesvirus (KSHV) or human herpesvirus 8 (HHV8) is present in Kaposi sarcomas and body-cavity-based lymphomas. Here we identify a novel abundant 1.2-kb RNA, polyadenylated nuclear RNA (PAN RNA), encoded by the virus. The majority of cDNAs produced from poly(A)-selected RNA isolated from a human body cavity lymphoma cell line 48 hr after butyrate induction of KSHV lytic replication represented PAN RNA. Within PAN RNA were two 9 and 16 nt stretches with 89% and 94% identity to U1 RNA. A third stretch of 14 nt was 93% complementary to U1. The 5' upstream region of PAN RNA contained both proximal and distal sequence elements characteristic of regulatory regions of U snRNAs, whereas the 3' end was polyadenylylated. PAN RNA was transcribed by RNA polymerase II, lacked a trimethylguanosine cap, and did not associate with polyribosomes. PAN RNA formed a speckled pattern in the nucleus typical of U snRNAs and colocalized with Sm protein. Therefore, PAN represents a new type of RNA, possessing features of both U snRNA and mRNA.

Publication types

  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Base Sequence
  • Burkitt Lymphoma
  • Butyrates / pharmacology
  • Butyric Acid
  • Cell Line
  • DNA, Complementary
  • Guanosine / analogs & derivatives
  • Herpesvirus 8, Human / genetics*
  • Herpesvirus 8, Human / isolation & purification
  • Herpesvirus 8, Human / physiology
  • Humans
  • In Situ Hybridization
  • Molecular Sequence Data
  • Promoter Regions, Genetic
  • RNA Polymerase II / metabolism
  • RNA, Small Nuclear / genetics
  • RNA, Viral / biosynthesis*
  • Regulatory Sequences, Nucleic Acid
  • Sarcoma, Kaposi / virology*
  • Sequence Homology, Nucleic Acid
  • Transcription, Genetic
  • Virus Replication / drug effects

Substances

  • Butyrates
  • DNA, Complementary
  • RNA, Small Nuclear
  • RNA, Viral
  • Butyric Acid
  • Guanosine
  • N(2),N(2),7-trimethylguanosine
  • RNA Polymerase II

Associated data

  • GENBANK/U50139
  • GENBANK/U50140