Molecular origins of selectivity in the interaction of amsacrine-4-carboxamide with GC-rich sequences in DNA

Anticancer Drug Des. 1996 Dec;11(8):611-24.

Abstract

To determine the molecular origins of the preferential binding of an antitumour amsacrine-4-carboxamide derivative to GC-rich sequences in DNA, we have used the polymerase chain reaction to synthesize a series of oligodeoxynucleotides in which the position of the purine 2-amino group is varied and then investigated the binding of the drug to normal and modified DNA molecules by means of DNase I footprinting. The results indicate that the 2-amino group of guanine represents an important but not unique element which directs selective binding of amsacrine-4-carboxamides to GC-rich sequences.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amsacrine / analogs & derivatives*
  • Amsacrine / chemistry
  • Amsacrine / pharmacology
  • Antineoplastic Agents / chemistry
  • Antineoplastic Agents / pharmacology*
  • Autoradiography
  • Cytidine
  • DNA / chemistry
  • DNA / drug effects*
  • DNA Footprinting
  • Escherichia coli
  • Guanine
  • Plasmids

Substances

  • Antineoplastic Agents
  • SN 16713
  • Amsacrine
  • Cytidine
  • Guanine
  • DNA