Helical preferences of alanine, glycine, and aminoisobutyric homopeptides

Proteins. 1997 May;28(1):83-93.

Abstract

The stability between helical conformations of homopeptides of alanine, glycine, and aminoisobutyric acid has been studied by means of quantum-mechanical methods. The influence of peptide length on the relative stability between helical conformations has also been analyzed by means of systematic studies for peptides of size up to 11 residues. Finally, the influence of the solvent has been examined by using self-consistent reaction field methods. The results provide a detailed picture of the modulation exerted by these factors on the helical preferences of these peptides.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Alanine / chemistry*
  • Alanine / metabolism
  • Aminoisobutyric Acids / chemistry*
  • Aminoisobutyric Acids / metabolism
  • Carbon Tetrachloride
  • Chemical Phenomena
  • Chemistry, Physical
  • Glycine / chemistry*
  • Glycine / metabolism
  • Models, Molecular
  • Models, Theoretical
  • Peptide Fragments / chemistry*
  • Protein Structure, Secondary*
  • Quantum Theory
  • Solutions
  • Solvents / chemistry
  • Thermodynamics

Substances

  • Aminoisobutyric Acids
  • Peptide Fragments
  • Solutions
  • Solvents
  • 2-aminoisobutyric acid
  • Carbon Tetrachloride
  • Alanine
  • Glycine