Specific targeting of human papillomavirus type 16 E7 oncogene with triple-helix forming purine oligodeoxyribonucleotides

Rom J Virol. 1995 Jul-Dec;46(3-4):179-88.

Abstract

Molecular mechanical calculations (computer modelling), optical DNA melting experiments and co-migration assay were used to assess stable helix formation at homopurine--homopyrimidine-rich target sites present in the human papillomavirus type 16 E7 oncogene (positions 656-673 on the genome map). The target sequence, either present in the E7 oncogene obtained by PCR technique or prepared from oligodeoxyribonucleotides (ODNs), can be specifically recognised by different 17-merpurine ODNs designed to form antiparallel or parallel triple helices. These in vitro experiments realised with rather long purine ODNs having a high degree of specificity open the way for in vivo tests focused on E7 oncogene targeting and suppression.

MeSH terms

  • Base Sequence
  • DNA, Viral / chemistry*
  • Genes, Synthetic*
  • Humans
  • Models, Molecular
  • Nucleic Acid Conformation*
  • Nucleic Acid Denaturation
  • Oligodeoxyribonucleotides / chemistry*
  • Oncogenes*
  • Papillomaviridae / genetics*
  • Polymerase Chain Reaction

Substances

  • DNA, Viral
  • Oligodeoxyribonucleotides