Rice proteins that bind single-stranded G-rich telomere DNA

Plant Mol Biol. 1998 Mar;36(5):661-72. doi: 10.1023/a:1005994719175.

Abstract

In this work, we have identified and characterized proteins in rice nuclear extracts that specifically bind the single-stranded G-rich telomere sequence. Three types of specific DNA-protein complexes (I, II, and III) were identified by gel retardation assays using synthetic telomere substrates consisting of two or more single-stranded TTTAGGG repeats and rice nuclear extracts. Since each complex has a unique biochemical property and differs in electrophoretic mobility, at least three different proteins interact with the G-rich telomere sequences. These proteins are called rice G-rich telomere binding protein (RGBP) and none of them show binding affinity to double-stranded telomere repeats or single-stranded C-rich sequence. Changing one or two G's to C's in the TTTAGGG repeats abolishes binding activity. RGBPs have a greatly reduced affinity for human and Tetrahymena telomeric sequence and do not efficiently bind the cognate G-rich telomere RNA sequence UUUAGGG. Like other telomere binding proteins, RGBPs are resistant to high salt concentrations. RNase sensitivity of the DNA-protein interaction. In this assay, we observed a novel complex (complex III) in gel retardation assays which did not alter the mobilities or the band intensities of the two pre-existing complexes (I and II). The complex III, in addition to binding to telomeric sequences, has a binding affinity to rice nuclear RNA, whereas two other complexes have a binding affinity to only single-stranded G-rich telomere DNA. Taken together, these studies suggest that RGBPs are new types of telomere-binding proteins that bind in vitro to single-stranded G-rich telomere DNA in the angiosperms.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Base Composition
  • Base Sequence
  • Binding Sites / genetics
  • DNA, Single-Stranded / chemistry
  • DNA, Single-Stranded / genetics*
  • DNA, Single-Stranded / metabolism*
  • DNA-Binding Proteins / isolation & purification
  • DNA-Binding Proteins / metabolism*
  • Humans
  • In Vitro Techniques
  • Oligodeoxyribonucleotides / genetics
  • Oligodeoxyribonucleotides / metabolism
  • Oligonucleotide Probes / genetics
  • Oryza / metabolism
  • Plant Proteins / isolation & purification
  • Plant Proteins / metabolism*
  • Protein Binding
  • Repetitive Sequences, Nucleic Acid
  • Sodium Chloride
  • Telomere / genetics*
  • Telomere / metabolism*

Substances

  • DNA, Single-Stranded
  • DNA-Binding Proteins
  • Oligodeoxyribonucleotides
  • Oligonucleotide Probes
  • Plant Proteins
  • Sodium Chloride