STRIRED: graphical analysis of string repeats

Bioinformatics. 1998;14(2):221-2. doi: 10.1093/bioinformatics/14.2.221.

Abstract

STRIRED is a toolkit to generate a graphical picture of the distribution of 4- to 6-mer repeats in a set of user-defined nucleic acid sequences.

Availability: The STRIRED package can be downloaded as self-extracting archive (strired.exe) by anonymous FTP from biol.dgbm.unina.it (143.225.252.1), in the directory /software/win95/STRIRED.

Contact: [email protected]. it.

MeSH terms

  • Base Sequence
  • Computational Biology
  • Computer Graphics*
  • Databases, Factual
  • Humans
  • RNA, Messenger / chemistry
  • RNA, Messenger / genetics
  • Repetitive Sequences, Nucleic Acid*
  • Sequence Homology, Nucleic Acid
  • Software*

Substances

  • RNA, Messenger