Base-pairing of 23 S rRNA ends is essential for ribosomal large subunit assembly

J Mol Biol. 1998 Feb 27;276(3):537-45. doi: 10.1006/jmbi.1997.1532.

Abstract

In ribosomal RNA precursors the spacer sequences bracketing mature 16 S and 23 S rRNA are base-paired to form long helices (processing stems). In pre-23 S rRNA, the processing stem is continued by eight base-pairs of mature 23 S rRNA known as helix 1. Recently, we have found that any part of 23 S rRNA between positions 40 and 2773 could be deleted without the loss of ribosome-like particle formation, while both end regions were indispensable. In this paper we have analyzed the role of the 5' and 3' end regions of 23 S rRNA during ribosomal 50 S assembly in vivo by using mutants of the 23 S rRNA gene. Deletions and substitutions in both strands of the helix 1 lead to the loss of plasmid derived 50 S formation. Compensatory mutations restoring helix 1 were assembled into functional 50 S subunits. We conclude that the helix 1 of 23 S rRNA is the main RNA determinant for ribosomal large-subunit assembly. Deletions in both the 5' and 3' strand of the processing stem reduced the ability of the 23 S rRNA to form ribosomal 50 S subunits. However, even the complete removal of either the 5' or the 3' strand of the processing stem did not abolish the 50 S assembly completely. Thus, processing stem facilitates, but is not essential for assembly.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adenine
  • Bacterial Proteins / biosynthesis
  • Base Composition
  • Base Sequence
  • Escherichia coli / genetics
  • Models, Molecular
  • Molecular Sequence Data
  • Mutagenesis, Site-Directed
  • Nucleic Acid Conformation*
  • Protein Biosynthesis
  • RNA Precursors / chemistry
  • RNA Precursors / metabolism
  • RNA, Ribosomal, 16S / chemistry
  • RNA, Ribosomal, 16S / metabolism
  • RNA, Ribosomal, 23S / chemistry*
  • RNA, Ribosomal, 23S / metabolism*
  • Ribosomes / metabolism*
  • Ribosomes / ultrastructure
  • Thymine

Substances

  • Bacterial Proteins
  • RNA Precursors
  • RNA, Ribosomal, 16S
  • RNA, Ribosomal, 23S
  • Adenine
  • Thymine