Sequences of exon 6 and the adjacent intron boundaries of the rat platelet-derived growth factor A-chain gene: implications for alternative splicing

Biochem Genet. 1997 Dec;35(11-12):395-405. doi: 10.1023/a:1022285717710.

Abstract

Platelet-derived growth factor (PDGF) is a potent stimulator of vascular smooth muscle cell growth. Two isoforms of PDGF A-chain mRNA that either include (long form) or exclude (short form) exon 6 are produced as a result of alternative splicing in mouse, rabbit, and human. The short form of PDGF A-chain is expressed in both resting and activated cells, while the long form is present predominantly in activated cells. Reverse transcription-polymerase chain reaction analysis with primers encompassing exon 6 revealed the presence of both long- and short-form PDGF A-chain transcripts in rat vascular smooth muscle cells. The nucleotide sequences of exon 6 and its intron boundaries were determined from rat vascular smooth muscle cell cDNA and rat leukocyte genomic DNA. Translation of the long form of PDGF A-chain mRNA was shown to terminate in the 70-base pair exon 6. Conserved sequences that may contribute to the regulation of alternative RNA splicing were identified in intron 5.

Publication types

  • Comparative Study

MeSH terms

  • Alternative Splicing*
  • Amino Acid Sequence
  • Animals
  • Base Sequence
  • Cells, Cultured
  • Conserved Sequence
  • Exons*
  • Introns*
  • Molecular Sequence Data
  • Muscle, Smooth, Vascular / cytology
  • Platelet-Derived Growth Factor / genetics*
  • Polymerase Chain Reaction
  • Protein Biosynthesis
  • Rats
  • Rats, Inbred WKY
  • Sequence Analysis, DNA
  • Sequence Homology, Nucleic Acid
  • Species Specificity

Substances

  • Platelet-Derived Growth Factor

Associated data

  • GENBANK/AB001027
  • GENBANK/AB001028
  • GENBANK/AB001029