Increased infectivity of hepatitis A virus cDNA clones with engineered 5'-terminal extra-cistronic sequences

New Microbiol. 1998 Oct;21(4):321-7.

Abstract

The genomic RNA of Hepatitis A virus (HAV), a picornavirus of the hepatovirus group, is a single-stranded molecule, ca. 7.5 kb in length of positive polarity. Translation of this uncapped RNA starts at the 10th (or 11th) AUG triplet (position 734-36), by a mechanism of internal initiation of translation. The long sequences extending between the uncapped 5'-end and the translation initiation site contain two (instead of just one) pyrimidine-rich tracts (PRTs) spanning nucleotides 94-140 and 711-724, respectively. The latter lies only 11 nucleotides upstream from the initiation site of translation, and the question arose as to whether the notoriously poor replication ability of HAV was a consequence of a down regulation of translation due to the too short "spacer" sequence intervening between the 3'-PRT and the initiation of the main open reading frame. To address this issue, a series of full-length HAV cDNA clones were constructed in which the "spacer" sequence (normally 11 nts) was brought to 45 nts. Following transfection of COS-1 cells with these constructs, the amount of HAV (+)-strand RNA was determined by dot hybridization using a strand-specific RNA probe. HAV cDNA clones carrying a 45-nt "spacer" increased two-fold the rate of (+)-strand viral RNA synthesis, suggesting that the poor translation ability of HAV RNA may be one of the mechanisms responsible for the lengthy replication cycle of HAV.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Base Sequence
  • COS Cells
  • DNA, Complementary / chemistry
  • DNA, Viral / chemistry*
  • Genes, Viral / physiology*
  • Hepatitis A / virology*
  • Hepatovirus / genetics
  • Hepatovirus / growth & development
  • Hepatovirus / physiology*
  • Humans
  • Molecular Sequence Data
  • Mutagenesis, Insertional
  • Nucleic Acid Hybridization
  • Open Reading Frames / physiology
  • Polymerase Chain Reaction
  • RNA Probes / chemistry
  • RNA, Viral / chemistry
  • RNA, Viral / genetics
  • Sequence Analysis, DNA
  • Transfection
  • Viral Structural Proteins / genetics*
  • Virus Replication / genetics

Substances

  • DNA, Complementary
  • DNA, Viral
  • RNA Probes
  • RNA, Viral
  • Viral Structural Proteins