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PipMaker--a web server for aligning two genomic DNA sequences.
Schwartz S, Zhang Z, Frazer KA, Smit A, Riemer C, Bouck J, Gibbs R, Hardison R, Miller W. Schwartz S, et al. Among authors: zhang z. Genome Res. 2000 Apr;10(4):577-86. doi: 10.1101/gr.10.4.577. Genome Res. 2000. PMID: 10779500 Free PMC article.
Human-mouse alignments with BLASTZ.
Schwartz S, Kent WJ, Smit A, Zhang Z, Baertsch R, Hardison RC, Haussler D, Miller W. Schwartz S, et al. Among authors: zhang z. Genome Res. 2003 Jan;13(1):103-7. doi: 10.1101/gr.809403. Genome Res. 2003. PMID: 12529312 Free PMC article.
A greedy algorithm for aligning DNA sequences.
Zhang Z, Schwartz S, Wagner L, Miller W. Zhang Z, et al. J Comput Biol. 2000 Feb-Apr;7(1-2):203-14. doi: 10.1089/10665270050081478. J Comput Biol. 2000. PMID: 10890397
Web-based visualization tools for bacterial genome alignments.
Florea L, Riemer C, Schwartz S, Zhang Z, Stojanovic N, Miller W, McClelland M. Florea L, et al. Among authors: zhang z. Nucleic Acids Res. 2000 Sep 15;28(18):3486-96. doi: 10.1093/nar/28.18.3486. Nucleic Acids Res. 2000. PMID: 10982867 Free PMC article.
Constructing aligned sequence blocks.
Miller W, Boguski M, Raghavachari B, Zhang Z, Hardison RC. Miller W, et al. Among authors: zhang z. J Comput Biol. 1994 Spring;1(1):51-64. doi: 10.1089/cmb.1994.1.51. J Comput Biol. 1994. PMID: 8790453
Chaining multiple-alignment blocks.
Zhang Z, Raghavachari B, Hardison RC, Miller W. Zhang Z, et al. J Comput Biol. 1994 Fall;1(3):217-26. doi: 10.1089/cmb.1994.1.217. J Comput Biol. 1994. PMID: 8790466
Post-processing long pairwise alignments.
Zhang Z, Berman P, Wiehe T, Miller W. Zhang Z, et al. Bioinformatics. 1999 Dec;15(12):1012-9. doi: 10.1093/bioinformatics/15.12.1012. Bioinformatics. 1999. PMID: 10745991
111,700 results
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