Clementi C - Search Results

1

How native-state topology affects the folding of dihydrofolate reductase and interleukin-1beta.

Clementi C, Jennings PA, Onuchic JN. Clementi C, et al. Proc Natl Acad Sci U S A. 2000 May 23;97(11):5871-6. doi: 10.1073/pnas.100547897. Proc Natl Acad Sci U S A. 2000. PMID: 10811910 Free PMC article.

2

Topological and energetic factors: what determines the structural details of the transition state ensemble and "en-route" intermediates for protein folding? An investigation for small globular proteins.

Clementi C, Nymeyer H, Onuchic JN. Clementi C, et al. J Mol Biol. 2000 May 19;298(5):937-53. doi: 10.1006/jmbi.2000.3693. J Mol Biol. 2000. PMID: 10801360

3

Prediction of folding mechanism for circular-permuted proteins.

Clementi C, Jennings PA, Onuchic JN. Clementi C, et al. J Mol Biol. 2001 Aug 24;311(4):879-90. doi: 10.1006/jmbi.2001.4871. J Mol Biol. 2001. PMID: 11518537

4

Interplay among tertiary contacts, secondary structure formation and side-chain packing in the protein folding mechanism: all-atom representation study of protein L.

Clementi C, García AE, Onuchic JN. Clementi C, et al. J Mol Biol. 2003 Feb 21;326(3):933-54. doi: 10.1016/s0022-2836(02)01379-7. J Mol Biol. 2003. PMID: 12581651

5

Quantifying the roughness on the free energy landscape: entropic bottlenecks and protein folding rates.

Chavez LL, Onuchic JN, Clementi C. Chavez LL, et al. Among authors: clementi c. J Am Chem Soc. 2004 Jul 14;126(27):8426-32. doi: 10.1021/ja049510+. J Am Chem Soc. 2004. PMID: 15237999

6

Balancing energy and entropy: a minimalist model for the characterization of protein folding landscapes.

Das P, Matysiak S, Clementi C. Das P, et al. Among authors: clementi c. Proc Natl Acad Sci U S A. 2005 Jul 19;102(29):10141-6. doi: 10.1073/pnas.0409471102. Epub 2005 Jul 8. Proc Natl Acad Sci U S A. 2005. PMID: 16006532 Free PMC article.

7

Characterization of the folding landscape of monomeric lactose repressor: quantitative comparison of theory and experiment.

Das P, Wilson CJ, Fossati G, Wittung-Stafshede P, Matthews KS, Clementi C. Das P, et al. Among authors: clementi c. Proc Natl Acad Sci U S A. 2005 Oct 11;102(41):14569-74. doi: 10.1073/pnas.0505844102. Epub 2005 Oct 3. Proc Natl Acad Sci U S A. 2005. PMID: 16203982 Free PMC article.

8

The experimental folding landscape of monomeric lactose repressor, a large two-domain protein, involves two kinetic intermediates.

Wilson CJ, Das P, Clementi C, Matthews KS, Wittung-Stafshede P. Wilson CJ, et al. Among authors: clementi c. Proc Natl Acad Sci U S A. 2005 Oct 11;102(41):14563-8. doi: 10.1073/pnas.0505808102. Epub 2005 Oct 3. Proc Natl Acad Sci U S A. 2005. PMID: 16203983 Free PMC article.

9

Low-dimensional, free-energy landscapes of protein-folding reactions by nonlinear dimensionality reduction.

Das P, Moll M, Stamati H, Kavraki LE, Clementi C. Das P, et al. Among authors: clementi c. Proc Natl Acad Sci U S A. 2006 Jun 27;103(26):9885-90. doi: 10.1073/pnas.0603553103. Epub 2006 Jun 19. Proc Natl Acad Sci U S A. 2006. PMID: 16785435 Free PMC article.

10

Restriction versus guidance in protein structure prediction.

Hegler JA, Lätzer J, Shehu A, Clementi C, Wolynes PG. Hegler JA, et al. Among authors: clementi c. Proc Natl Acad Sci U S A. 2009 Sep 8;106(36):15302-7. doi: 10.1073/pnas.0907002106. Epub 2009 Aug 24. Proc Natl Acad Sci U S A. 2009. PMID: 19706384 Free PMC article.

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