Bulyk ML - Search Results

1

Computational comparison of two draft sequences of the human genome.

Aach J, Bulyk ML, Church GM, Comander J, Derti A, Shendure J. Aach J, et al. Among authors: bulyk ml. Nature. 2001 Feb 15;409(6822):856-9. doi: 10.1038/35057055. Nature. 2001. PMID: 11237010

2

Quantifying DNA-protein interactions by double-stranded DNA arrays.

Bulyk ML, Gentalen E, Lockhart DJ, Church GM. Bulyk ML, et al. Nat Biotechnol. 1999 Jun;17(6):573-7. doi: 10.1038/9878. Nat Biotechnol. 1999. PMID: 10385322

3

Exploring the DNA-binding specificities of zinc fingers with DNA microarrays.

Bulyk ML, Huang X, Choo Y, Church GM. Bulyk ML, et al. Proc Natl Acad Sci U S A. 2001 Jun 19;98(13):7158-63. doi: 10.1073/pnas.111163698. Epub 2001 Jun 12. Proc Natl Acad Sci U S A. 2001. PMID: 11404456 Free PMC article.

4

Nucleotides of transcription factor binding sites exert interdependent effects on the binding affinities of transcription factors.

Bulyk ML, Johnson PL, Church GM. Bulyk ML, et al. Nucleic Acids Res. 2002 Mar 1;30(5):1255-61. doi: 10.1093/nar/30.5.1255. Nucleic Acids Res. 2002. PMID: 11861919 Free PMC article.

5

A statistical model for investigating binding probabilities of DNA nucleotide sequences using microarrays.

Lee ML, Bulyk ML, Whitmore GA, Church GM. Lee ML, et al. Among authors: bulyk ml. Biometrics. 2002 Dec;58(4):981-8. doi: 10.1111/j.0006-341x.2002.00981.x. Biometrics. 2002. PMID: 12495153

6

A motif co-occurrence approach for genome-wide prediction of transcription-factor-binding sites in Escherichia coli.

Bulyk ML, McGuire AM, Masuda N, Church GM. Bulyk ML, et al. Genome Res. 2004 Feb;14(2):201-8. doi: 10.1101/gr.1448004. Genome Res. 2004. PMID: 14762058 Free PMC article.

7

Rapid analysis of the DNA-binding specificities of transcription factors with DNA microarrays.

Mukherjee S, Berger MF, Jona G, Wang XS, Muzzey D, Snyder M, Young RA, Bulyk ML. Mukherjee S, et al. Among authors: bulyk ml. Nat Genet. 2004 Dec;36(12):1331-9. doi: 10.1038/ng1473. Epub 2004 Nov 14. Nat Genet. 2004. PMID: 15543148 Free PMC article.

8

Compact, universal DNA microarrays to comprehensively determine transcription-factor binding site specificities.

Berger MF, Philippakis AA, Qureshi AM, He FS, Estep PW 3rd, Bulyk ML. Berger MF, et al. Among authors: bulyk ml. Nat Biotechnol. 2006 Nov;24(11):1429-35. doi: 10.1038/nbt1246. Epub 2006 Sep 24. Nat Biotechnol. 2006. PMID: 16998473 Free PMC article.

9

Systematic identification of mammalian regulatory motifs' target genes and functions.

Warner JB, Philippakis AA, Jaeger SA, He FS, Lin J, Bulyk ML. Warner JB, et al. Among authors: bulyk ml. Nat Methods. 2008 Apr;5(4):347-53. doi: 10.1038/nmeth.1188. Epub 2008 Mar 2. Nat Methods. 2008. PMID: 18311145 Free PMC article.

10

Universal protein-binding microarrays for the comprehensive characterization of the DNA-binding specificities of transcription factors.

Berger MF, Bulyk ML. Berger MF, et al. Among authors: bulyk ml. Nat Protoc. 2009;4(3):393-411. doi: 10.1038/nprot.2008.195. Nat Protoc. 2009. PMID: 19265799 Free PMC article.

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