Karplus M - Search Results

1

Crystal structures of two closely related but antigenically distinct HLA-A2/melanocyte-melanoma tumor-antigen peptide complexes.

Sliz P, Michielin O, Cerottini JC, Luescher I, Romero P, Karplus M, Wiley DC. Sliz P, et al. Among authors: karplus m. J Immunol. 2001 Sep 15;167(6):3276-84. doi: 10.4049/jimmunol.167.6.3276. J Immunol. 2001. PMID: 11544315

2

Binding free energy differences in a TCR-peptide-MHC complex induced by a peptide mutation: a simulation analysis.

Michielin O, Karplus M. Michielin O, et al. Among authors: karplus m. J Mol Biol. 2002 Nov 29;324(3):547-69. doi: 10.1016/s0022-2836(02)00880-x. J Mol Biol. 2002. PMID: 12445788

3

Modeling of the TCR-MHC-peptide complex.

Michielin O, Luescher I, Karplus M. Michielin O, et al. Among authors: karplus m. J Mol Biol. 2000 Jul 28;300(5):1205-35. doi: 10.1006/jmbi.2000.3788. J Mol Biol. 2000. PMID: 10903865

4

T cell recognition of hapten. Anatomy of T cell receptor binding of a H-2kd-associated photoreactive peptide derivative.

Kessler B, Michielin O, Blanchard CL, Apostolou I, Delarbre C, Gachelin G, Grégoire C, Malissen B, Cerottini JC, Wurm F, Karplus M, Luescher IF. Kessler B, et al. Among authors: karplus m. J Biol Chem. 1999 Feb 5;274(6):3622-31. doi: 10.1074/jbc.274.6.3622. J Biol Chem. 1999. PMID: 9920911 Free article.

5

HOOK: a program for finding novel molecular architectures that satisfy the chemical and steric requirements of a macromolecule binding site.

Eisen MB, Wiley DC, Karplus M, Hubbard RE. Eisen MB, et al. Among authors: karplus m. Proteins. 1994 Jul;19(3):199-221. doi: 10.1002/prot.340190305. Proteins. 1994. PMID: 7937734

Functional group sites with defined positions and orientations are derived from known ligand structures or the multicopy simulation search (MCSS) method (Miranker, A., Karplus, M. Proteins 11:29-34, 1991). HOOK places molecular "skeletons" from a database into the p …

Functional group sites with defined positions and orientations are derived from known ligand structures or the multicopy simulation search ( …

6

Relation between sequence and structure of HIV-1 protease inhibitor complexes: a model system for the analysis of protein flexibility.

Zoete V, Michielin O, Karplus M. Zoete V, et al. Among authors: karplus m. J Mol Biol. 2002 Jan 4;315(1):21-52. doi: 10.1006/jmbi.2001.5173. J Mol Biol. 2002. PMID: 11771964

7

Protein-ligand binding free energy estimation using molecular mechanics and continuum electrostatics. Application to HIV-1 protease inhibitors.

Zoete V, Michielin O, Karplus M. Zoete V, et al. Among authors: karplus m. J Comput Aided Mol Des. 2003 Dec;17(12):861-80. doi: 10.1023/b:jcam.0000021882.99270.4c. J Comput Aided Mol Des. 2003. PMID: 15124934

8

Conformational analysis of a stereochemically complete set of cis-enediol peptide analogues.

Michielin O, Zoete V, Gierasch TM, Eckstein J, Napper A, Verdine G, Karplus M. Michielin O, et al. Among authors: karplus m. J Am Chem Soc. 2002 Sep 18;124(37):11131-41. doi: 10.1021/ja012695p. J Am Chem Soc. 2002. PMID: 12224961

9

Ligand-induced conformational changes in ras p21: a normal mode and energy minimization analysis.

Ma J, Karplus M. Ma J, et al. Among authors: karplus m. J Mol Biol. 1997 Nov 21;274(1):114-31. doi: 10.1006/jmbi.1997.1313. J Mol Biol. 1997. PMID: 9398520

10

PDB-based protein loop prediction: parameters for selection and methods for optimization.

van Vlijmen HW, Karplus M. van Vlijmen HW, et al. Among authors: karplus m. J Mol Biol. 1997 Apr 11;267(4):975-1001. doi: 10.1006/jmbi.1996.0857. J Mol Biol. 1997. PMID: 9135125

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