Karchin R - Search Results

1

What is the value added by human intervention in protein structure prediction?

Karplus K, Karchin R, Barrett C, Tu S, Cline M, Diekhans M, Grate L, Casper J, Hughey R. Karplus K, et al. Among authors: karchin r. Proteins. 2001;Suppl 5:86-91. doi: 10.1002/prot.10021. Proteins. 2001. PMID: 11835485

2

Hidden Markov models that use predicted local structure for fold recognition: alphabets of backbone geometry.

Karchin R, Cline M, Mandel-Gutfreund Y, Karplus K. Karchin R, et al. Proteins. 2003 Jun 1;51(4):504-14. doi: 10.1002/prot.10369. Proteins. 2003. PMID: 12784210

3

Combining local-structure, fold-recognition, and new fold methods for protein structure prediction.

Karplus K, Karchin R, Draper J, Casper J, Mandel-Gutfreund Y, Diekhans M, Hughey R. Karplus K, et al. Among authors: karchin r. Proteins. 2003;53 Suppl 6:491-6. doi: 10.1002/prot.10540. Proteins. 2003. PMID: 14579338

4

Evaluation of local structure alphabets based on residue burial.

Karchin R, Cline M, Karplus K. Karchin R, et al. Proteins. 2004 May 15;55(3):508-18. doi: 10.1002/prot.20008. Proteins. 2004. PMID: 15103615

5

PREDICT-2ND: a tool for generalized protein local structure prediction.

Katzman S, Barrett C, Thiltgen G, Karchin R, Karplus K. Katzman S, et al. Among authors: karchin r. Bioinformatics. 2008 Nov 1;24(21):2453-9. doi: 10.1093/bioinformatics/btn438. Epub 2008 Aug 30. Bioinformatics. 2008. PMID: 18757875 Free PMC article.

6

Weighting hidden Markov models for maximum discrimination.

Karchin R, Hughey R. Karchin R, et al. Bioinformatics. 1998;14(9):772-82. doi: 10.1093/bioinformatics/14.9.772. Bioinformatics. 1998. PMID: 9918947

7

Classifying G-protein coupled receptors with support vector machines.

Karchin R, Karplus K, Haussler D. Karchin R, et al. Bioinformatics. 2002 Jan;18(1):147-59. doi: 10.1093/bioinformatics/18.1.147. Bioinformatics. 2002. PMID: 11836223

8

Calibrating E-values for hidden Markov models using reverse-sequence null models.

Karplus K, Karchin R, Shackelford G, Hughey R. Karplus K, et al. Among authors: karchin r. Bioinformatics. 2005 Nov 15;21(22):4107-15. doi: 10.1093/bioinformatics/bti629. Epub 2005 Aug 25. Bioinformatics. 2005. PMID: 16123115

9

Using bioinformatics to predict the functional impact of SNVs.

Cline MS, Karchin R. Cline MS, et al. Among authors: karchin r. Bioinformatics. 2011 Feb 15;27(4):441-8. doi: 10.1093/bioinformatics/btq695. Epub 2010 Dec 15. Bioinformatics. 2011. PMID: 21159622 Free PMC article. Review.

10

Human genetics special issue on computational molecular medicine.

Karchin R, Cline MS. Karchin R, et al. Hum Genet. 2015 May;134(5):455-7. doi: 10.1007/s00439-015-1545-6. Hum Genet. 2015. PMID: 25805167 Free PMC article. No abstract available.

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