Karplus M - Search Results

1

Small-world view of the amino acids that play a key role in protein folding.

Vendruscolo M, Dokholyan NV, Paci E, Karplus M. Vendruscolo M, et al. Among authors: karplus m. Phys Rev E Stat Nonlin Soft Matter Phys. 2002 Jun;65(6 Pt 1):061910. doi: 10.1103/PhysRevE.65.061910. Epub 2002 Jun 25. Phys Rev E Stat Nonlin Soft Matter Phys. 2002. PMID: 12188762

2

Native and non-native interactions along protein folding and unfolding pathways.

Paci E, Vendruscolo M, Karplus M. Paci E, et al. Among authors: karplus m. Proteins. 2002 May 15;47(3):379-92. doi: 10.1002/prot.10089. Proteins. 2002. PMID: 11948791

3

Three key residues form a critical contact network in a protein folding transition state.

Vendruscolo M, Paci E, Dobson CM, Karplus M. Vendruscolo M, et al. Among authors: karplus m. Nature. 2001 Feb 1;409(6820):641-5. doi: 10.1038/35054591. Nature. 2001. PMID: 11214326

4

Importance of metastable states in the free energy landscapes of polypeptide chains.

Auer S, Miller MA, Krivov SV, Dobson CM, Karplus M, Vendruscolo M. Auer S, et al. Among authors: karplus m. Phys Rev Lett. 2007 Oct 26;99(17):178104. doi: 10.1103/PhysRevLett.99.178104. Epub 2007 Oct 26. Phys Rev Lett. 2007. PMID: 17995375

5

Self-consistent determination of the transition state for protein folding: application to a fibronectin type III domain.

Paci E, Clarke J, Steward A, Vendruscolo M, Karplus M. Paci E, et al. Among authors: karplus m. Proc Natl Acad Sci U S A. 2003 Jan 21;100(2):394-9. doi: 10.1073/pnas.232704999. Epub 2003 Jan 6. Proc Natl Acad Sci U S A. 2003. PMID: 12515856 Free PMC article.

6

Structures and relative free energies of partially folded states of proteins.

Vendruscolo M, Paci E, Karplus M, Dobson CM. Vendruscolo M, et al. Among authors: karplus m. Proc Natl Acad Sci U S A. 2003 Dec 9;100(25):14817-21. doi: 10.1073/pnas.2036516100. Epub 2003 Dec 1. Proc Natl Acad Sci U S A. 2003. PMID: 14657374 Free PMC article.

7

Transition state contact orders correlate with protein folding rates.

Paci E, Lindorff-Larsen K, Dobson CM, Karplus M, Vendruscolo M. Paci E, et al. Among authors: karplus m. J Mol Biol. 2005 Sep 23;352(3):495-500. doi: 10.1016/j.jmb.2005.06.081. J Mol Biol. 2005. PMID: 16120445

8

Exploration of partially unfolded states of human alpha-lactalbumin by molecular dynamics simulation.

Paci E, Smith LJ, Dobson CM, Karplus M. Paci E, et al. Among authors: karplus m. J Mol Biol. 2001 Feb 16;306(2):329-47. doi: 10.1006/jmbi.2000.4337. J Mol Biol. 2001. PMID: 11237603

9

Validity of Gō models: comparison with a solvent-shielded empirical energy decomposition.

Paci E, Vendruscolo M, Karplus M. Paci E, et al. Among authors: karplus m. Biophys J. 2002 Dec;83(6):3032-8. doi: 10.1016/S0006-3495(02)75308-3. Biophys J. 2002. PMID: 12496075 Free PMC article.

10

Rare fluctuations of native proteins sampled by equilibrium hydrogen exchange.

Vendruscolo M, Paci E, Dobson CM, Karplus M. Vendruscolo M, et al. Among authors: karplus m. J Am Chem Soc. 2003 Dec 24;125(51):15686-7. doi: 10.1021/ja036523z. J Am Chem Soc. 2003. PMID: 14677926

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