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An integrated computational pipeline and database to support whole-genome sequence annotation.
Mungall CJ, Misra S, Berman BP, Carlson J, Frise E, Harris N, Marshall B, Shu S, Kaminker JS, Prochnik SE, Smith CD, Smith E, Tupy JL, Wiel C, Rubin GM, Lewis SE. Mungall CJ, et al. Among authors: lewis se. Genome Biol. 2002;3(12):RESEARCH0081. doi: 10.1186/gb-2002-3-12-research0081. Epub 2002 Dec 23. Genome Biol. 2002. PMID: 12537570 Free PMC article. Review.
Reactome knowledgebase of human biological pathways and processes.
Matthews L, Gopinath G, Gillespie M, Caudy M, Croft D, de Bono B, Garapati P, Hemish J, Hermjakob H, Jassal B, Kanapin A, Lewis S, Mahajan S, May B, Schmidt E, Vastrik I, Wu G, Birney E, Stein L, D'Eustachio P. Matthews L, et al. Among authors: lewis s. Nucleic Acids Res. 2009 Jan;37(Database issue):D619-22. doi: 10.1093/nar/gkn863. Epub 2008 Nov 3. Nucleic Acids Res. 2009. PMID: 18981052 Free PMC article.
Reactome: a knowledgebase of biological pathways.
Joshi-Tope G, Gillespie M, Vastrik I, D'Eustachio P, Schmidt E, de Bono B, Jassal B, Gopinath GR, Wu GR, Matthews L, Lewis S, Birney E, Stein L. Joshi-Tope G, et al. Among authors: lewis s. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D428-32. doi: 10.1093/nar/gki072. Nucleic Acids Res. 2005. PMID: 15608231 Free PMC article.
Apollo: a sequence annotation editor.
Lewis SE, Searle SM, Harris N, Gibson M, Lyer V, Richter J, Wiel C, Bayraktaroglu L, Birney E, Crosby MA, Kaminker JS, Matthews BB, Prochnik SE, Smithy CD, Tupy JL, Rubin GM, Misra S, Mungall CJ, Clamp ME. Lewis SE, et al. Genome Biol. 2002;3(12):RESEARCH0082. doi: 10.1186/gb-2002-3-12-research0082. Epub 2002 Dec 23. Genome Biol. 2002. PMID: 12537571 Free PMC article. Review.
The Genome Knowledgebase: a resource for biologists and bioinformaticists.
Joshi-Tope G, Vastrik I, Gopinath GR, Matthews L, Schmidt E, Gillespie M, D'Eustachio P, Jassal B, Lewis S, Wu G, Birney E, Stein L. Joshi-Tope G, et al. Among authors: lewis s. Cold Spring Harb Symp Quant Biol. 2003;68:237-43. doi: 10.1101/sqb.2003.68.237. Cold Spring Harb Symp Quant Biol. 2003. PMID: 15338623 No abstract available.
AmiGO: online access to ontology and annotation data.
Carbon S, Ireland A, Mungall CJ, Shu S, Marshall B, Lewis S; AmiGO Hub; Web Presence Working Group. Carbon S, et al. Among authors: lewis s. Bioinformatics. 2009 Jan 15;25(2):288-9. doi: 10.1093/bioinformatics/btn615. Epub 2008 Nov 25. Bioinformatics. 2009. PMID: 19033274 Free PMC article.
Reactome: a knowledge base of biologic pathways and processes.
Vastrik I, D'Eustachio P, Schmidt E, Gopinath G, Croft D, de Bono B, Gillespie M, Jassal B, Lewis S, Matthews L, Wu G, Birney E, Stein L. Vastrik I, et al. Among authors: lewis s. Genome Biol. 2007;8(3):R39. doi: 10.1186/gb-2007-8-3-r39. Genome Biol. 2007. PMID: 17367534 Free PMC article.
Genome annotation assessment in Drosophila melanogaster.
Reese MG, Hartzell G, Harris NL, Ohler U, Abril JF, Lewis SE. Reese MG, et al. Among authors: lewis se. Genome Res. 2000 Apr;10(4):483-501. doi: 10.1101/gr.10.4.483. Genome Res. 2000. PMID: 10779488 Free PMC article.
7,217 results