Harrison PM - Search Results

1

Digging deep for ancient relics: a survey of protein motifs in the intergenic sequences of four eukaryotic genomes.

Zhang ZL, Harrison PM, Gerstein M. Zhang ZL, et al. Among authors: harrison pm. J Mol Biol. 2002 Nov 8;323(5):811-22. doi: 10.1016/s0022-2836(02)01035-5. J Mol Biol. 2002. PMID: 12417195

2

A small reservoir of disabled ORFs in the yeast genome and its implications for the dynamics of proteome evolution.

Harrison P, Kumar A, Lan N, Echols N, Snyder M, Gerstein M. Harrison P, et al. J Mol Biol. 2002 Feb 22;316(3):409-19. doi: 10.1006/jmbi.2001.5343. J Mol Biol. 2002. PMID: 11866506

3

Comprehensive analysis of amino acid and nucleotide composition in eukaryotic genomes, comparing genes and pseudogenes.

Echols N, Harrison P, Balasubramanian S, Luscombe NM, Bertone P, Zhang Z, Gerstein M. Echols N, et al. Nucleic Acids Res. 2002 Jun 1;30(11):2515-23. doi: 10.1093/nar/30.11.2515. Nucleic Acids Res. 2002. PMID: 12034841 Free PMC article.

4

A question of size: the eukaryotic proteome and the problems in defining it.

Harrison PM, Kumar A, Lang N, Snyder M, Gerstein M. Harrison PM, et al. Nucleic Acids Res. 2002 Mar 1;30(5):1083-90. doi: 10.1093/nar/30.5.1083. Nucleic Acids Res. 2002. PMID: 11861898 Free PMC article.

5

Studying genomes through the aeons: protein families, pseudogenes and proteome evolution.

Harrison PM, Gerstein M. Harrison PM, et al. J Mol Biol. 2002 May 17;318(5):1155-74. doi: 10.1016/s0022-2836(02)00109-2. J Mol Biol. 2002. PMID: 12083509 Review.

6

A method to assess compositional bias in biological sequences and its application to prion-like glutamine/asparagine-rich domains in eukaryotic proteomes.

Harrison PM, Gerstein M. Harrison PM, et al. Genome Biol. 2003;4(6):R40. doi: 10.1186/gb-2003-4-6-r40. Epub 2003 May 30. Genome Biol. 2003. PMID: 12801414 Free PMC article.

7

A "polyORFomic" analysis of prokaryote genomes using disabled-homology filtering reveals conserved but undiscovered short ORFs.

Harrison PM, Carriero N, Liu Y, Gerstein M. Harrison PM, et al. J Mol Biol. 2003 Nov 7;333(5):885-92. doi: 10.1016/j.jmb.2003.09.016. J Mol Biol. 2003. PMID: 14583187

8

Integrated pseudogene annotation for human chromosome 22: evidence for transcription.

Zheng D, Zhang Z, Harrison PM, Karro J, Carriero N, Gerstein M. Zheng D, et al. Among authors: harrison pm. J Mol Biol. 2005 May 27;349(1):27-45. doi: 10.1016/j.jmb.2005.02.072. Epub 2005 Apr 2. J Mol Biol. 2005. PMID: 15876366

9

Digging for dead genes: an analysis of the characteristics of the pseudogene population in the Caenorhabditis elegans genome.

Harrison PM, Echols N, Gerstein MB. Harrison PM, et al. Nucleic Acids Res. 2001 Feb 1;29(3):818-30. doi: 10.1093/nar/29.3.818. Nucleic Acids Res. 2001. PMID: 11160906 Free PMC article.

10

Identification of pseudogenes in the Drosophila melanogaster genome.

Harrison PM, Milburn D, Zhang Z, Bertone P, Gerstein M. Harrison PM, et al. Nucleic Acids Res. 2003 Feb 1;31(3):1033-7. doi: 10.1093/nar/gkg169. Nucleic Acids Res. 2003. PMID: 12560500 Free PMC article.

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