Karplus M - Search Results

1

Determination of a transition state at atomic resolution from protein engineering data.

Paci E, Vendruscolo M, Dobson CM, Karplus M. Paci E, et al. Among authors: karplus m. J Mol Biol. 2002 Nov 15;324(1):151-63. doi: 10.1016/s0022-2836(02)00944-0. J Mol Biol. 2002. PMID: 12421565

2

Transition state contact orders correlate with protein folding rates.

Paci E, Lindorff-Larsen K, Dobson CM, Karplus M, Vendruscolo M. Paci E, et al. Among authors: karplus m. J Mol Biol. 2005 Sep 23;352(3):495-500. doi: 10.1016/j.jmb.2005.06.081. J Mol Biol. 2005. PMID: 16120445

3

Forced unfolding of fibronectin type 3 modules: an analysis by biased molecular dynamics simulations.

Paci E, Karplus M. Paci E, et al. Among authors: karplus m. J Mol Biol. 1999 May 7;288(3):441-59. doi: 10.1006/jmbi.1999.2670. J Mol Biol. 1999. PMID: 10329153

4

Three key residues form a critical contact network in a protein folding transition state.

Vendruscolo M, Paci E, Dobson CM, Karplus M. Vendruscolo M, et al. Among authors: karplus m. Nature. 2001 Feb 1;409(6820):641-5. doi: 10.1038/35054591. Nature. 2001. PMID: 11214326

5

Forces and energetics of hapten-antibody dissociation: a biased molecular dynamics simulation study.

Paci E, Caflisch A, Plückthun A, Karplus M. Paci E, et al. Among authors: karplus m. J Mol Biol. 2001 Nov 30;314(3):589-605. doi: 10.1006/jmbi.2001.5103. J Mol Biol. 2001. PMID: 11846569

6

Validity of Gō models: comparison with a solvent-shielded empirical energy decomposition.

Paci E, Vendruscolo M, Karplus M. Paci E, et al. Among authors: karplus m. Biophys J. 2002 Dec;83(6):3032-8. doi: 10.1016/S0006-3495(02)75308-3. Biophys J. 2002. PMID: 12496075 Free PMC article.

7

Structures and relative free energies of partially folded states of proteins.

Vendruscolo M, Paci E, Karplus M, Dobson CM. Vendruscolo M, et al. Among authors: karplus m. Proc Natl Acad Sci U S A. 2003 Dec 9;100(25):14817-21. doi: 10.1073/pnas.2036516100. Epub 2003 Dec 1. Proc Natl Acad Sci U S A. 2003. PMID: 14657374 Free PMC article.

8

Rare fluctuations of native proteins sampled by equilibrium hydrogen exchange.

Vendruscolo M, Paci E, Dobson CM, Karplus M. Vendruscolo M, et al. Among authors: karplus m. J Am Chem Soc. 2003 Dec 24;125(51):15686-7. doi: 10.1021/ja036523z. J Am Chem Soc. 2003. PMID: 14677926

9

Unfolding proteins by external forces and temperature: the importance of topology and energetics.

Paci E, Karplus M. Paci E, et al. Among authors: karplus m. Proc Natl Acad Sci U S A. 2000 Jun 6;97(12):6521-6. doi: 10.1073/pnas.100124597. Proc Natl Acad Sci U S A. 2000. PMID: 10823892 Free PMC article.

10

Exploration of partially unfolded states of human alpha-lactalbumin by molecular dynamics simulation.

Paci E, Smith LJ, Dobson CM, Karplus M. Paci E, et al. Among authors: karplus m. J Mol Biol. 2001 Feb 16;306(2):329-47. doi: 10.1006/jmbi.2000.4337. J Mol Biol. 2001. PMID: 11237603

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