Paci E - Search Results

1

Determination of a transition state at atomic resolution from protein engineering data.

Paci E, Vendruscolo M, Dobson CM, Karplus M. Paci E, et al. J Mol Biol. 2002 Nov 15;324(1):151-63. doi: 10.1016/s0022-2836(02)00944-0. J Mol Biol. 2002. PMID: 12421565

2

Three key residues form a critical contact network in a protein folding transition state.

Vendruscolo M, Paci E, Dobson CM, Karplus M. Vendruscolo M, et al. Among authors: paci e. Nature. 2001 Feb 1;409(6820):641-5. doi: 10.1038/35054591. Nature. 2001. PMID: 11214326

3

Forces and energetics of hapten-antibody dissociation: a biased molecular dynamics simulation study.

Paci E, Caflisch A, Plückthun A, Karplus M. Paci E, et al. J Mol Biol. 2001 Nov 30;314(3):589-605. doi: 10.1006/jmbi.2001.5103. J Mol Biol. 2001. PMID: 11846569

4

Forced unfolding of fibronectin type 3 modules: an analysis by biased molecular dynamics simulations.

Paci E, Karplus M. Paci E, et al. J Mol Biol. 1999 May 7;288(3):441-59. doi: 10.1006/jmbi.1999.2670. J Mol Biol. 1999. PMID: 10329153

5

Unfolding proteins by external forces and temperature: the importance of topology and energetics.

Paci E, Karplus M. Paci E, et al. Proc Natl Acad Sci U S A. 2000 Jun 6;97(12):6521-6. doi: 10.1073/pnas.100124597. Proc Natl Acad Sci U S A. 2000. PMID: 10823892 Free PMC article.

6

Exploration of partially unfolded states of human alpha-lactalbumin by molecular dynamics simulation.

Paci E, Smith LJ, Dobson CM, Karplus M. Paci E, et al. J Mol Biol. 2001 Feb 16;306(2):329-47. doi: 10.1006/jmbi.2000.4337. J Mol Biol. 2001. PMID: 11237603

7

Small-world view of the amino acids that play a key role in protein folding.

Vendruscolo M, Dokholyan NV, Paci E, Karplus M. Vendruscolo M, et al. Among authors: paci e. Phys Rev E Stat Nonlin Soft Matter Phys. 2002 Jun;65(6 Pt 1):061910. doi: 10.1103/PhysRevE.65.061910. Epub 2002 Jun 25. Phys Rev E Stat Nonlin Soft Matter Phys. 2002. PMID: 12188762

8

CHARMM: the biomolecular simulation program.

Brooks BR, Brooks CL 3rd, Mackerell AD Jr, Nilsson L, Petrella RJ, Roux B, Won Y, Archontis G, Bartels C, Boresch S, Caflisch A, Caves L, Cui Q, Dinner AR, Feig M, Fischer S, Gao J, Hodoscek M, Im W, Kuczera K, Lazaridis T, Ma J, Ovchinnikov V, Paci E, Pastor RW, Post CB, Pu JZ, Schaefer M, Tidor B, Venable RM, Woodcock HL, Wu X, Yang W, York DM, Karplus M. Brooks BR, et al. Among authors: paci e. J Comput Chem. 2009 Jul 30;30(10):1545-614. doi: 10.1002/jcc.21287. J Comput Chem. 2009. PMID: 19444816 Free PMC article. Review.

9

Intrinsic compressibility and volume compression in solvated proteins by molecular dynamics simulation at high pressure.

Paci E, Marchi M. Paci E, et al. Proc Natl Acad Sci U S A. 1996 Oct 15;93(21):11609-14. doi: 10.1073/pnas.93.21.11609. Proc Natl Acad Sci U S A. 1996. PMID: 8876183 Free PMC article.

10

Dimer asymmetry in superoxide dismutase studied by molecular dynamics simulation.

Falconi M, Gallimbeni R, Paci E. Falconi M, et al. Among authors: paci e. J Comput Aided Mol Des. 1996 Oct;10(5):490-8. doi: 10.1007/BF00124478. J Comput Aided Mol Des. 1996. PMID: 8951656

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