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Page 1
Apollo: a sequence annotation editor.
Lewis SE, Searle SM, Harris N, Gibson M, Lyer V, Richter J, Wiel C, Bayraktaroglu L, Birney E, Crosby MA, Kaminker JS, Matthews BB, Prochnik SE, Smithy CD, Tupy JL, Rubin GM, Misra S, Mungall CJ, Clamp ME. Lewis SE, et al. Among authors: searle sm. Genome Biol. 2002;3(12):RESEARCH0082. doi: 10.1186/gb-2002-3-12-research0082. Epub 2002 Dec 23. Genome Biol. 2002. PMID: 12537571 Free PMC article. Review.
The otter annotation system.
Searle SM, Gilbert J, Iyer V, Clamp M. Searle SM, et al. Genome Res. 2004 May;14(5):963-70. doi: 10.1101/gr.1864804. Genome Res. 2004. PMID: 15123593 Free PMC article.
The Ensembl automatic gene annotation system.
Curwen V, Eyras E, Andrews TD, Clarke L, Mongin E, Searle SM, Clamp M. Curwen V, et al. Among authors: searle sm. Genome Res. 2004 May;14(5):942-50. doi: 10.1101/gr.1858004. Genome Res. 2004. PMID: 15123590 Free PMC article.
Ensembl 2005.
Hubbard T, Andrews D, Caccamo M, Cameron G, Chen Y, Clamp M, Clarke L, Coates G, Cox T, Cunningham F, Curwen V, Cutts T, Down T, Durbin R, Fernandez-Suarez XM, Gilbert J, Hammond M, Herrero J, Hotz H, Howe K, Iyer V, Jekosch K, Kahari A, Kasprzyk A, Keefe D, Keenan S, Kokocinsci F, London D, Longden I, McVicker G, Melsopp C, Meidl P, Potter S, Proctor G, Rae M, Rios D, Schuster M, Searle S, Severin J, Slater G, Smedley D, Smith J, Spooner W, Stabenau A, Stalker J, Storey R, Trevanion S, Ureta-Vidal A, Vogel J, White S, Woodwark C, Birney E. Hubbard T, et al. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D447-53. doi: 10.1093/nar/gki138. Nucleic Acids Res. 2005. PMID: 15608235 Free PMC article.
The Ensembl analysis pipeline.
Potter SC, Clarke L, Curwen V, Keenan S, Mongin E, Searle SM, Stabenau A, Storey R, Clamp M. Potter SC, et al. Among authors: searle sm. Genome Res. 2004 May;14(5):934-41. doi: 10.1101/gr.1859804. Genome Res. 2004. PMID: 15123589 Free PMC article.
The Ensembl genome database project.
Hubbard T, Barker D, Birney E, Cameron G, Chen Y, Clark L, Cox T, Cuff J, Curwen V, Down T, Durbin R, Eyras E, Gilbert J, Hammond M, Huminiecki L, Kasprzyk A, Lehvaslaiho H, Lijnzaad P, Melsopp C, Mongin E, Pettett R, Pocock M, Potter S, Rust A, Schmidt E, Searle S, Slater G, Smith J, Spooner W, Stabenau A, Stalker J, Stupka E, Ureta-Vidal A, Vastrik I, Clamp M. Hubbard T, et al. Nucleic Acids Res. 2002 Jan 1;30(1):38-41. doi: 10.1093/nar/30.1.38. Nucleic Acids Res. 2002. PMID: 11752248 Free PMC article.
Ensembl 2002: accommodating comparative genomics.
Clamp M, Andrews D, Barker D, Bevan P, Cameron G, Chen Y, Clark L, Cox T, Cuff J, Curwen V, Down T, Durbin R, Eyras E, Gilbert J, Hammond M, Hubbard T, Kasprzyk A, Keefe D, Lehvaslaiho H, Iyer V, Melsopp C, Mongin E, Pettett R, Potter S, Rust A, Schmidt E, Searle S, Slater G, Smith J, Spooner W, Stabenau A, Stalker J, Stupka E, Ureta-Vidal A, Vastrik I, Birney E. Clamp M, et al. Nucleic Acids Res. 2003 Jan 1;31(1):38-42. doi: 10.1093/nar/gkg083. Nucleic Acids Res. 2003. PMID: 12519943 Free PMC article.
Ensembl 2004.
Birney E, Andrews D, Bevan P, Caccamo M, Cameron G, Chen Y, Clarke L, Coates G, Cox T, Cuff J, Curwen V, Cutts T, Down T, Durbin R, Eyras E, Fernandez-Suarez XM, Gane P, Gibbins B, Gilbert J, Hammond M, Hotz H, Iyer V, Kahari A, Jekosch K, Kasprzyk A, Keefe D, Keenan S, Lehvaslaiho H, McVicker G, Melsopp C, Meidl P, Mongin E, Pettett R, Potter S, Proctor G, Rae M, Searle S, Slater G, Smedley D, Smith J, Spooner W, Stabenau A, Stalker J, Storey R, Ureta-Vidal A, Woodwark C, Clamp M, Hubbard T. Birney E, et al. Nucleic Acids Res. 2004 Jan 1;32(Database issue):D468-70. doi: 10.1093/nar/gkh038. Nucleic Acids Res. 2004. PMID: 14681459 Free PMC article.
An overview of Ensembl.
Birney E, Andrews TD, Bevan P, Caccamo M, Chen Y, Clarke L, Coates G, Cuff J, Curwen V, Cutts T, Down T, Eyras E, Fernandez-Suarez XM, Gane P, Gibbins B, Gilbert J, Hammond M, Hotz HR, Iyer V, Jekosch K, Kahari A, Kasprzyk A, Keefe D, Keenan S, Lehvaslaiho H, McVicker G, Melsopp C, Meidl P, Mongin E, Pettett R, Potter S, Proctor G, Rae M, Searle S, Slater G, Smedley D, Smith J, Spooner W, Stabenau A, Stalker J, Storey R, Ureta-Vidal A, Woodwark KC, Cameron G, Durbin R, Cox A, Hubbard T, Clamp M. Birney E, et al. Genome Res. 2004 May;14(5):925-8. doi: 10.1101/gr.1860604. Epub 2004 Apr 12. Genome Res. 2004. PMID: 15078858 Free PMC article. Review.
The Ensembl gene annotation system.
Aken BL, Ayling S, Barrell D, Clarke L, Curwen V, Fairley S, Fernandez Banet J, Billis K, García Girón C, Hourlier T, Howe K, Kähäri A, Kokocinski F, Martin FJ, Murphy DN, Nag R, Ruffier M, Schuster M, Tang YA, Vogel JH, White S, Zadissa A, Flicek P, Searle SM. Aken BL, et al. Among authors: searle sm. Database (Oxford). 2016 Jun 23;2016:baw093. doi: 10.1093/database/baw093. Print 2016. Database (Oxford). 2016. PMID: 27337980 Free PMC article.
86 results