Karp PD - Search Results

1

Knowledge acquisition, consistency checking and concurrency control for Gene Ontology (GO).

Yeh I, Karp PD, Noy NF, Altman RB. Yeh I, et al. Among authors: karp pd. Bioinformatics. 2003 Jan 22;19(2):241-8. doi: 10.1093/bioinformatics/19.2.241. Bioinformatics. 2003. PMID: 12538245

2

An ontology for biological function based on molecular interactions.

Karp PD. Karp PD. Bioinformatics. 2000 Mar;16(3):269-85. doi: 10.1093/bioinformatics/16.3.269. Bioinformatics. 2000. PMID: 10869020

3

Evaluation of computational metabolic-pathway predictions for Helicobacter pylori.

Paley SM, Karp PD. Paley SM, et al. Among authors: karp pd. Bioinformatics. 2002 May;18(5):715-24. doi: 10.1093/bioinformatics/18.5.715. Bioinformatics. 2002. PMID: 12050068

4

The Pathway Tools software.

Karp PD, Paley S, Romero P. Karp PD, et al. Bioinformatics. 2002;18 Suppl 1:S225-32. doi: 10.1093/bioinformatics/18.suppl_1.s225. Bioinformatics. 2002. PMID: 12169551

5

Using functional and organizational information to improve genome-wide computational prediction of transcription units on pathway-genome databases.

Romero PR, Karp PD. Romero PR, et al. Among authors: karp pd. Bioinformatics. 2004 Mar 22;20(5):709-17. doi: 10.1093/bioinformatics/btg471. Epub 2004 Jan 29. Bioinformatics. 2004. PMID: 14751985

6

Computational analysis of Plasmodium falciparum metabolism: organizing genomic information to facilitate drug discovery.

Yeh I, Hanekamp T, Tsoka S, Karp PD, Altman RB. Yeh I, et al. Among authors: karp pd. Genome Res. 2004 May;14(5):917-24. doi: 10.1101/gr.2050304. Epub 2004 Apr 12. Genome Res. 2004. PMID: 15078855 Free PMC article.

7

Querying and computing with BioCyc databases.

Krummenacker M, Paley S, Mueller L, Yan T, Karp PD. Krummenacker M, et al. Among authors: karp pd. Bioinformatics. 2005 Aug 15;21(16):3454-5. doi: 10.1093/bioinformatics/bti546. Epub 2005 Jun 16. Bioinformatics. 2005. PMID: 15961440 Free PMC article.

8

Using genome-context data to identify specific types of functional associations in pathway/genome databases.

Green ML, Karp PD. Green ML, et al. Among authors: karp pd. Bioinformatics. 2007 Jul 1;23(13):i205-11. doi: 10.1093/bioinformatics/btm213. Bioinformatics. 2007. PMID: 17646298

9

Annotation-based inference of transporter function.

Lee TJ, Paulsen I, Karp P. Lee TJ, et al. Bioinformatics. 2008 Jul 1;24(13):i259-67. doi: 10.1093/bioinformatics/btn180. Bioinformatics. 2008. PMID: 18586723 Free PMC article.

10

Optimal metabolic route search based on atom mappings.

Latendresse M, Krummenacker M, Karp PD. Latendresse M, et al. Among authors: karp pd. Bioinformatics. 2014 Jul 15;30(14):2043-50. doi: 10.1093/bioinformatics/btu150. Epub 2014 Mar 17. Bioinformatics. 2014. PMID: 24642060

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