Fukui K - Search Results

1

Molecular dynamics, free energy, and SPR analyses of the interactions between the SH2 domain of Grb2 and ErbB phosphotyrosyl peptides.

Suenaga A, Hatakeyama M, Ichikawa M, Yu X, Futatsugi N, Narumi T, Fukui K, Terada T, Taiji M, Shirouzu M, Yokoyama S, Konagaya A. Suenaga A, et al. Among authors: fukui k. Biochemistry. 2003 May 13;42(18):5195-200. doi: 10.1021/bi034113h. Biochemistry. 2003. PMID: 12731860

2

An efficient computational method for calculating ligand binding affinities.

Suenaga A, Okimoto N, Hirano Y, Fukui K. Suenaga A, et al. Among authors: fukui k. PLoS One. 2012;7(8):e42846. doi: 10.1371/journal.pone.0042846. Epub 2012 Aug 20. PLoS One. 2012. PMID: 22916168 Free PMC article.

3

Functional profiling of asymmetrically-organized human CCT/TRiC chaperonin.

Araki K, Suenaga A, Kusano H, Tanaka R, Hatta T, Natsume T, Fukui K. Araki K, et al. Among authors: fukui k. Biochem Biophys Res Commun. 2016 Dec 9;481(3-4):232-238. doi: 10.1016/j.bbrc.2016.10.120. Epub 2016 Oct 30. Biochem Biophys Res Commun. 2016. PMID: 27806916

4

RNAapt3D: RNA aptamer 3D-structural modeling database.

Sato R, Suzuki K, Yasuda Y, Suenaga A, Fukui K. Sato R, et al. Among authors: fukui k. Biophys J. 2022 Dec 20;121(24):4770-4776. doi: 10.1016/j.bpj.2022.09.023. Epub 2022 Sep 22. Biophys J. 2022. PMID: 36146935 Free PMC article.

5

Understanding the recognition mechanism of protein-RNA complexes using energy based approach.

Gromiha MM, Yokota K, Fukui K. Gromiha MM, et al. Among authors: fukui k. Curr Protein Pept Sci. 2010 Nov;11(7):629-38. doi: 10.2174/138920310794109166. Curr Protein Pept Sci. 2010. PMID: 20887255

6

A crosslinker-based identification of redox relay targets.

Araki K, Ushioda R, Kusano H, Tanaka R, Hatta T, Fukui K, Nagata K, Natsume T. Araki K, et al. Among authors: fukui k. Anal Biochem. 2017 Mar 1;520:22-26. doi: 10.1016/j.ab.2016.12.025. Epub 2016 Dec 31. Anal Biochem. 2017. PMID: 28048978

7

Energy based approach for understanding the recognition mechanism in protein-protein complexes.

Gromiha MM, Yokota K, Fukui K. Gromiha MM, et al. Among authors: fukui k. Mol Biosyst. 2009 Dec;5(12):1779-86. doi: 10.1039/B904161N. Mol Biosyst. 2009. PMID: 19593470

8

Fragmentation study of peptides using Fourier transform ion cyclotron resonance with infrared multiphoton dissociation: experiment and simulation.

Fukui K, Naito Y, Akiyama Y, Takahashi K. Fukui K, et al. Eur J Mass Spectrom (Chichester). 2004;10(5):639-47. doi: 10.1255/ejms.656. Eur J Mass Spectrom (Chichester). 2004. PMID: 15531797

9

Sequence and structural analysis of binding site residues in protein-protein complexes.

Gromiha MM, Yokota K, Fukui K. Gromiha MM, et al. Among authors: fukui k. Int J Biol Macromol. 2010 Mar 1;46(2):187-92. doi: 10.1016/j.ijbiomac.2009.11.009. Epub 2009 Dec 21. Int J Biol Macromol. 2010. PMID: 20026105

10

Theoretical investigation on the glycan-binding specificity of Agrocybe cylindracea galectin using molecular modeling and molecular dynamics simulation studies.

Parasuraman P, Murugan V, Selvin JF, Gromiha MM, Fukui K, Veluraja K. Parasuraman P, et al. Among authors: fukui k. J Mol Recognit. 2015 Sep;28(9):528-38. doi: 10.1002/jmr.2468. Epub 2015 Mar 11. J Mol Recognit. 2015. PMID: 25760468

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