Paci E - Search Results

1

Analysis of the distributed computing approach applied to the folding of a small beta peptide.

Paci E, Cavalli A, Vendruscolo M, Caflisch A. Paci E, et al. Proc Natl Acad Sci U S A. 2003 Jul 8;100(14):8217-22. doi: 10.1073/pnas.1331838100. Epub 2003 Jun 18. Proc Natl Acad Sci U S A. 2003. PMID: 12815104 Free PMC article.

2

Native and non-native interactions along protein folding and unfolding pathways.

Paci E, Vendruscolo M, Karplus M. Paci E, et al. Proteins. 2002 May 15;47(3):379-92. doi: 10.1002/prot.10089. Proteins. 2002. PMID: 11948791

3

Validity of Gō models: comparison with a solvent-shielded empirical energy decomposition.

Paci E, Vendruscolo M, Karplus M. Paci E, et al. Biophys J. 2002 Dec;83(6):3032-8. doi: 10.1016/S0006-3495(02)75308-3. Biophys J. 2002. PMID: 12496075 Free PMC article.

4

Self-consistent determination of the transition state for protein folding: application to a fibronectin type III domain.

Paci E, Clarke J, Steward A, Vendruscolo M, Karplus M. Paci E, et al. Proc Natl Acad Sci U S A. 2003 Jan 21;100(2):394-9. doi: 10.1073/pnas.232704999. Epub 2003 Jan 6. Proc Natl Acad Sci U S A. 2003. PMID: 12515856 Free PMC article.

5

Protein folding: bringing theory and experiment closer together.

Vendruscolo M, Paci E. Vendruscolo M, et al. Among authors: paci e. Curr Opin Struct Biol. 2003 Feb;13(1):82-7. doi: 10.1016/s0959-440x(03)00007-1. Curr Opin Struct Biol. 2003. PMID: 12581664 Review.

6

Fast protein folding on downhill energy landscape.

Cavalli A, Haberthür U, Paci E, Caflisch A. Cavalli A, et al. Among authors: paci e. Protein Sci. 2003 Aug;12(8):1801-3. doi: 10.1110/ps.0366103. Protein Sci. 2003. PMID: 12876329 Free PMC article.

7

Calculation of mutational free energy changes in transition states for protein folding.

Lindorff-Larsen K, Paci E, Serrano L, Dobson CM, Vendruscolo M. Lindorff-Larsen K, et al. Among authors: paci e. Biophys J. 2003 Aug;85(2):1207-14. doi: 10.1016/S0006-3495(03)74556-1. Biophys J. 2003. PMID: 12885664 Free PMC article.

8

Structures and relative free energies of partially folded states of proteins.

Vendruscolo M, Paci E, Karplus M, Dobson CM. Vendruscolo M, et al. Among authors: paci e. Proc Natl Acad Sci U S A. 2003 Dec 9;100(25):14817-21. doi: 10.1073/pnas.2036516100. Epub 2003 Dec 1. Proc Natl Acad Sci U S A. 2003. PMID: 14657374 Free PMC article.

9

Rare fluctuations of native proteins sampled by equilibrium hydrogen exchange.

Vendruscolo M, Paci E, Dobson CM, Karplus M. Vendruscolo M, et al. Among authors: paci e. J Am Chem Soc. 2003 Dec 24;125(51):15686-7. doi: 10.1021/ja036523z. J Am Chem Soc. 2003. PMID: 14677926

10

Comparison of the transition state ensembles for folding of Im7 and Im9 determined using all-atom molecular dynamics simulations with phi value restraints.

Paci E, Friel CT, Lindorff-Larsen K, Radford SE, Karplus M, Vendruscolo M. Paci E, et al. Proteins. 2004 Feb 15;54(3):513-25. doi: 10.1002/prot.10595. Proteins. 2004. PMID: 14747999

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