Thompson JD - Search Results

1

PipeAlign: A new toolkit for protein family analysis.

Plewniak F, Bianchetti L, Brelivet Y, Carles A, Chalmel F, Lecompte O, Mochel T, Moulinier L, Muller A, Muller J, Prigent V, Ripp R, Thierry JC, Thompson JD, Wicker N, Poch O. Plewniak F, et al. Among authors: thompson jd. Nucleic Acids Res. 2003 Jul 1;31(13):3829-32. doi: 10.1093/nar/gkg518. Nucleic Acids Res. 2003. PMID: 12824430 Free PMC article.

2

The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools.

Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG. Thompson JD, et al. Nucleic Acids Res. 1997 Dec 15;25(24):4876-82. doi: 10.1093/nar/25.24.4876. Nucleic Acids Res. 1997. PMID: 9396791 Free PMC article.

3

BAliBASE: a benchmark alignment database for the evaluation of multiple alignment programs.

Thompson JD, Plewniak F, Poch O. Thompson JD, et al. Bioinformatics. 1999 Jan;15(1):87-8. doi: 10.1093/bioinformatics/15.1.87. Bioinformatics. 1999. PMID: 10068696

4

A comprehensive comparison of multiple sequence alignment programs.

Thompson JD, Plewniak F, Poch O. Thompson JD, et al. Nucleic Acids Res. 1999 Jul 1;27(13):2682-90. doi: 10.1093/nar/27.13.2682. Nucleic Acids Res. 1999. PMID: 10373585 Free PMC article.

5

DbClustal: rapid and reliable global multiple alignments of protein sequences detected by database searches.

Thompson JD, Plewniak F, Thierry J, Poch O. Thompson JD, et al. Nucleic Acids Res. 2000 Aug 1;28(15):2919-26. doi: 10.1093/nar/28.15.2919. Nucleic Acids Res. 2000. PMID: 10908355 Free PMC article.

6

Ballast: blast post-processing based on locally conserved segments.

Plewniak F, Thompson JD, Poch O. Plewniak F, et al. Among authors: thompson jd. Bioinformatics. 2000 Sep;16(9):750-9. doi: 10.1093/bioinformatics/16.9.750. Bioinformatics. 2000. PMID: 11108697

7

BAliBASE (Benchmark Alignment dataBASE): enhancements for repeats, transmembrane sequences and circular permutations.

Bahr A, Thompson JD, Thierry JC, Poch O. Bahr A, et al. Among authors: thompson jd. Nucleic Acids Res. 2001 Jan 1;29(1):323-6. doi: 10.1093/nar/29.1.323. Nucleic Acids Res. 2001. PMID: 11125126 Free PMC article.

8

Multiple alignment of complete sequences (MACS) in the post-genomic era.

Lecompte O, Thompson JD, Plewniak F, Thierry J, Poch O. Lecompte O, et al. Among authors: thompson jd. Gene. 2001 May 30;270(1-2):17-30. doi: 10.1016/s0378-1119(01)00461-9. Gene. 2001. PMID: 11403999 Review.

9

Towards a reliable objective function for multiple sequence alignments.

Thompson JD, Plewniak F, Ripp R, Thierry JC, Poch O. Thompson JD, et al. J Mol Biol. 2001 Dec 7;314(4):937-51. doi: 10.1006/jmbi.2001.5187. J Mol Biol. 2001. PMID: 11734009

10

RASCAL: rapid scanning and correction of multiple sequence alignments.

Thompson JD, Thierry JC, Poch O. Thompson JD, et al. Bioinformatics. 2003 Jun 12;19(9):1155-61. doi: 10.1093/bioinformatics/btg133. Bioinformatics. 2003. PMID: 12801878

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