Jaakkola TS - Search Results

1

Comparing the continuous representation of time-series expression profiles to identify differentially expressed genes.

Bar-Joseph Z, Gerber G, Simon I, Gifford DK, Jaakkola TS. Bar-Joseph Z, et al. Among authors: jaakkola ts. Proc Natl Acad Sci U S A. 2003 Sep 2;100(18):10146-51. doi: 10.1073/pnas.1732547100. Epub 2003 Aug 21. Proc Natl Acad Sci U S A. 2003. PMID: 12934016 Free PMC article.

2

Using graphical models and genomic expression data to statistically validate models of genetic regulatory networks.

Hartemink AJ, Gifford DK, Jaakkola TS, Young RA. Hartemink AJ, et al. Among authors: jaakkola ts. Pac Symp Biocomput. 2001:422-33. doi: 10.1142/9789814447362_0042. Pac Symp Biocomput. 2001. PMID: 11262961 Free article.

3

Fast optimal leaf ordering for hierarchical clustering.

Bar-Joseph Z, Gifford DK, Jaakkola TS. Bar-Joseph Z, et al. Among authors: jaakkola ts. Bioinformatics. 2001;17 Suppl 1:S22-9. doi: 10.1093/bioinformatics/17.suppl_1.s22. Bioinformatics. 2001. PMID: 11472989

4

Serial regulation of transcriptional regulators in the yeast cell cycle.

Simon I, Barnett J, Hannett N, Harbison CT, Rinaldi NJ, Volkert TL, Wyrick JJ, Zeitlinger J, Gifford DK, Jaakkola TS, Young RA. Simon I, et al. Among authors: jaakkola ts. Cell. 2001 Sep 21;106(6):697-708. doi: 10.1016/s0092-8674(01)00494-9. Cell. 2001. PMID: 11572776 Free article.

5

Combining location and expression data for principled discovery of genetic regulatory network models.

Hartemink AJ, Gifford DK, Jaakkola TS, Young RA. Hartemink AJ, et al. Among authors: jaakkola ts. Pac Symp Biocomput. 2002:437-49. Pac Symp Biocomput. 2002. PMID: 11928497 Free article.

6

Bayesian network approach to cell signaling pathway modeling.

Sachs K, Gifford D, Jaakkola T, Sorger P, Lauffenburger DA. Sachs K, et al. Sci STKE. 2002 Sep 3;2002(148):pe38. doi: 10.1126/stke.2002.148.pe38. Sci STKE. 2002. PMID: 12209052

7

K-ary clustering with optimal leaf ordering for gene expression data.

Bar-Joseph Z, Demaine ED, Gifford DK, Srebro N, Hamel AM, Jaakkola TS. Bar-Joseph Z, et al. Among authors: jaakkola ts. Bioinformatics. 2003 Jun 12;19(9):1070-8. doi: 10.1093/bioinformatics/btg030. Bioinformatics. 2003. PMID: 12801867

8

Continuous representations of time-series gene expression data.

Bar-Joseph Z, Gerber GK, Gifford DK, Jaakkola TS, Simon I. Bar-Joseph Z, et al. Among authors: jaakkola ts. J Comput Biol. 2003;10(3-4):341-56. doi: 10.1089/10665270360688057. J Comput Biol. 2003. PMID: 12935332

9

Computational discovery of gene modules and regulatory networks.

Bar-Joseph Z, Gerber GK, Lee TI, Rinaldi NJ, Yoo JY, Robert F, Gordon DB, Fraenkel E, Jaakkola TS, Young RA, Gifford DK. Bar-Joseph Z, et al. Among authors: jaakkola ts. Nat Biotechnol. 2003 Nov;21(11):1337-42. doi: 10.1038/nbt890. Epub 2003 Oct 12. Nat Biotechnol. 2003. PMID: 14555958 Free article.

10

Semi-supervised analysis of gene expression profiles for lineage-specific development in the Caenorhabditis elegans embryo.

Qi Y, Missiuro PE, Kapoor A, Hunter CP, Jaakkola TS, Gifford DK, Ge H. Qi Y, et al. Among authors: jaakkola ts. Bioinformatics. 2006 Jul 15;22(14):e417-23. doi: 10.1093/bioinformatics/btl256. Bioinformatics. 2006. PMID: 16873502

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