Brooks BR - Search Results

1

Conformational states of a TT mismatch from molecular dynamics simulation of duplex d (CGCGATTCGCG).

Venable RM, Widmalm G, Brooks BR, Egan W, Pastor RW. Venable RM, et al. Among authors: brooks br. Biopolymers. 1992 Jul;32(7):783-94. doi: 10.1002/bip.360320707. Biopolymers. 1992. PMID: 1391631

2

Langevin dynamics of peptides: the frictional dependence of isomerization rates of N-acetylalanyl-N'-methylamide.

Loncharich RJ, Brooks BR, Pastor RW. Loncharich RJ, et al. Among authors: brooks br. Biopolymers. 1992 May;32(5):523-35. doi: 10.1002/bip.360320508. Biopolymers. 1992. PMID: 1515543

3

Theoretically determined three-dimensional structures for amphipathic segments of the HIV-1 gp41 envelope protein.

Venable RM, Pastor RW, Brooks BR, Carson FW. Venable RM, et al. Among authors: brooks br. AIDS Res Hum Retroviruses. 1989 Feb;5(1):7-22. doi: 10.1089/aid.1989.5.7. AIDS Res Hum Retroviruses. 1989. PMID: 2541749

4

Theoretically determined three-dimensional structure for the repeating tetrapeptide unit of the circumsporozoite coat protein of the malaria parasite Plasmodium falciparum.

Brooks BR, Pastor RW, Carson FW. Brooks BR, et al. Proc Natl Acad Sci U S A. 1987 Jul;84(13):4470-4. doi: 10.1073/pnas.84.13.4470. Proc Natl Acad Sci U S A. 1987. PMID: 3299369 Free PMC article.

5

Theoretical studies of relaxation of a monomeric subunit of HIV-1 protease in water using molecular dynamics.

Venable RM, Brooks BR, Carson FW. Venable RM, et al. Among authors: brooks br. Proteins. 1993 Apr;15(4):374-84. doi: 10.1002/prot.340150405. Proteins. 1993. PMID: 8460108

6

Simulations of membranes and other interfacial systems using P2(1) and Pc periodic boundary conditions.

Dolan EA, Venable RM, Pastor RW, Brooks BR. Dolan EA, et al. Among authors: brooks br. Biophys J. 2002 May;82(5):2317-25. doi: 10.1016/S0006-3495(02)75577-X. Biophys J. 2002. PMID: 11964222 Free PMC article.

7

Simulation-based methods for interpreting x-ray data from lipid bilayers.

Klauda JB, Kucerka N, Brooks BR, Pastor RW, Nagle JF. Klauda JB, et al. Among authors: brooks br. Biophys J. 2006 Apr 15;90(8):2796-807. doi: 10.1529/biophysj.105.075697. Epub 2006 Jan 27. Biophys J. 2006. PMID: 16443652 Free PMC article.

8

Adjacent gauche stabilization in linear alkanes: implications for polymer models and conformational analysis.

Klauda JB, Pastor RW, Brooks BR. Klauda JB, et al. Among authors: brooks br. J Phys Chem B. 2005 Aug 25;109(33):15684-6. doi: 10.1021/jp0527608. J Phys Chem B. 2005. PMID: 16852989 Free PMC article.

9

An ab initio study on the torsional surface of alkanes and its effect on molecular simulations of alkanes and a DPPC bilayer.

Klauda JB, Brooks BR, MacKerell AD Jr, Venable RM, Pastor RW. Klauda JB, et al. Among authors: brooks br. J Phys Chem B. 2005 Mar 24;109(11):5300-11. doi: 10.1021/jp0468096. J Phys Chem B. 2005. PMID: 16863197

10

Dynamical motions of lipids and a finite size effect in simulations of bilayers.

Klauda JB, Brooks BR, Pastor RW. Klauda JB, et al. Among authors: brooks br. J Chem Phys. 2006 Oct 14;125(14):144710. doi: 10.1063/1.2354486. J Chem Phys. 2006. PMID: 17042634 Free PMC article.

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