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Subtraction of cap-trapped full-length cDNA libraries to select rare transcripts.
Hirozane-Kishikawa T, Shiraki T, Waki K, Nakamura M, Arakawa T, Kawai J, Fagiolini M, Hensch TK, Hayashizaki Y, Carninci P. Hirozane-Kishikawa T, et al. Among authors: nakamura m. Biotechniques. 2003 Sep;35(3):510-6, 518. doi: 10.2144/03353st04. Biotechniques. 2003. PMID: 14513556 Free article.
Development of a DNA barcode tagging method for monitoring dynamic changes in gene expression by using an ultra high-throughput sequencer.
Maeda N, Nishiyori H, Nakamura M, Kawazu C, Murata M, Sano H, Hayashida K, Fukuda S, Tagami M, Hasegawa A, Murakami K, Schroder K, Irvine K, Hume D, Hayashizaki Y, Carninci P, Suzuki H. Maeda N, et al. Among authors: nakamura m. Biotechniques. 2008 Jul;45(1):95-7. doi: 10.2144/000112814. Biotechniques. 2008. PMID: 18611171 Free article.
Targeting a complex transcriptome: the construction of the mouse full-length cDNA encyclopedia.
Carninci P, Waki K, Shiraki T, Konno H, Shibata K, Itoh M, Aizawa K, Arakawa T, Ishii Y, Sasaki D, Bono H, Kondo S, Sugahara Y, Saito R, Osato N, Fukuda S, Sato K, Watahiki A, Hirozane-Kishikawa T, Nakamura M, Shibata Y, Yasunishi A, Kikuchi N, Yoshiki A, Kusakabe M, Gustincich S, Beisel K, Pavan W, Aidinis V, Nakagawara A, Held WA, Iwata H, Kono T, Nakauchi H, Lyons P, Wells C, Hume DA, Fagiolini M, Hensch TK, Brinkmeier M, Camper S, Hirota J, Mombaerts P, Muramatsu M, Okazaki Y, Kawai J, Hayashizaki Y. Carninci P, et al. Among authors: nakamura m. Genome Res. 2003 Jun;13(6B):1273-89. doi: 10.1101/gr.1119703. Genome Res. 2003. PMID: 12819125 Free PMC article.
CAGE: cap analysis of gene expression.
Kodzius R, Kojima M, Nishiyori H, Nakamura M, Fukuda S, Tagami M, Sasaki D, Imamura K, Kai C, Harbers M, Hayashizaki Y, Carninci P. Kodzius R, et al. Among authors: nakamura m. Nat Methods. 2006 Mar;3(3):211-22. doi: 10.1038/nmeth0306-211. Nat Methods. 2006. PMID: 16489339 No abstract available.
Gene organization in rice revealed by full-length cDNA mapping and gene expression analysis through microarray.
Satoh K, Doi K, Nagata T, Kishimoto N, Suzuki K, Otomo Y, Kawai J, Nakamura M, Hirozane-Kishikawa T, Kanagawa S, Arakawa T, Takahashi-Iida J, Murata M, Ninomiya N, Sasaki D, Fukuda S, Tagami M, Yamagata H, Kurita K, Kamiya K, Yamamoto M, Kikuta A, Bito T, Fujitsuka N, Ito K, Kanamori H, Choi IR, Nagamura Y, Matsumoto T, Murakami K, Matsubara K, Carninci P, Hayashizaki Y, Kikuchi S. Satoh K, et al. Among authors: nakamura m. PLoS One. 2007 Nov 28;2(11):e1235. doi: 10.1371/journal.pone.0001235. PLoS One. 2007. PMID: 18043742 Free PMC article.
Hidden layers of human small RNAs.
Kawaji H, Nakamura M, Takahashi Y, Sandelin A, Katayama S, Fukuda S, Daub CO, Kai C, Kawai J, Yasuda J, Carninci P, Hayashizaki Y. Kawaji H, et al. Among authors: nakamura m. BMC Genomics. 2008 Apr 10;9:157. doi: 10.1186/1471-2164-9-157. BMC Genomics. 2008. PMID: 18402656 Free PMC article.
Cap analysis gene expression for high-throughput analysis of transcriptional starting point and identification of promoter usage.
Shiraki T, Kondo S, Katayama S, Waki K, Kasukawa T, Kawaji H, Kodzius R, Watahiki A, Nakamura M, Arakawa T, Fukuda S, Sasaki D, Podhajska A, Harbers M, Kawai J, Carninci P, Hayashizaki Y. Shiraki T, et al. Among authors: nakamura m. Proc Natl Acad Sci U S A. 2003 Dec 23;100(26):15776-81. doi: 10.1073/pnas.2136655100. Epub 2003 Dec 8. Proc Natl Acad Sci U S A. 2003. PMID: 14663149 Free PMC article.
[Cap analysis gene expression: CAGE].
Nakamura M, Carninci P. Nakamura M, et al. Tanpakushitsu Kakusan Koso. 2004 Dec;49(17 Suppl):2688-93. Tanpakushitsu Kakusan Koso. 2004. PMID: 15669240 Review. Japanese. No abstract available.
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