Yasuoka K - Search Results

1

Tyr-317 phosphorylation increases Shc structural rigidity and reduces coupling of domain motions remote from the phosphorylation site as revealed by molecular dynamics simulations.

Suenaga A, Kiyatkin AB, Hatakeyama M, Futatsugi N, Okimoto N, Hirano Y, Narumi T, Kawai A, Susukita R, Koishi T, Furusawa H, Yasuoka K, Takada N, Ohno Y, Taiji M, Ebisuzaki T, Hoek JB, Konagaya A, Kholodenko BN. Suenaga A, et al. Among authors: yasuoka k. J Biol Chem. 2004 Feb 6;279(6):4657-62. doi: 10.1074/jbc.M310598200. Epub 2003 Nov 12. J Biol Chem. 2004. PMID: 14613932 Free article.

2

Construction of full-atomistic polymer amorphous structures using reverse-mapping from Kremer-Grest models.

Nitta H, Ozawa T, Yasuoka K. Nitta H, et al. Among authors: yasuoka k. J Chem Phys. 2023 Nov 21;159(19):194903. doi: 10.1063/5.0159722. J Chem Phys. 2023. PMID: 37982485

3

Combining Molecular Dynamics and Machine Learning to Analyze Shear Thinning for Alkane and Globular Lubricants in the Low Shear Regime.

Yasuda I, Kobayashi Y, Endo K, Hayakawa Y, Fujiwara K, Yajima K, Arai N, Yasuoka K. Yasuda I, et al. Among authors: yasuoka k. ACS Appl Mater Interfaces. 2023 Feb 15;15(6):8567-8578. doi: 10.1021/acsami.2c16366. Epub 2023 Jan 30. ACS Appl Mater Interfaces. 2023. PMID: 36715349

4

Prediction of Water Diffusion in Wide Varieties of Polymers with All-Atom Molecular Dynamics Simulations and Deep Generative Models.

Kawada R, Endo K, Yasuoka K, Kojima H, Matubayasi N. Kawada R, et al. Among authors: yasuoka k. J Chem Inf Model. 2023 Jan 9;63(1):76-86. doi: 10.1021/acs.jcim.2c01316. Epub 2022 Dec 7. J Chem Inf Model. 2023. PMID: 36475723

5

Nanoscale hydrophobic interaction and nanobubble nucleation.

Koishi T, Yoo S, Yasuoka K, Zeng XC, Narumi T, Susukita R, Kawai A, Furusawa H, Suenaga A, Okimoto N, Futatsugi N, Ebisuzaki T. Koishi T, et al. Among authors: yasuoka k. Phys Rev Lett. 2004 Oct 29;93(18):185701. doi: 10.1103/PhysRevLett.93.185701. Epub 2004 Oct 25. Phys Rev Lett. 2004. PMID: 15525179

6

Large-scale molecular-dynamics simulation of nanoscale hydrophobic interaction and nanobubble formation.

Koishi T, Yasuoka K, Ebisuzaki T, Yoo S, Zeng XC. Koishi T, et al. Among authors: yasuoka k. J Chem Phys. 2005 Nov 22;123(20):204707. doi: 10.1063/1.2102906. J Chem Phys. 2005. PMID: 16351293

7

Cutoff radius effect of isotropic periodic sum method for transport coefficients of Lennard-Jones liquid.

Takahashi K, Yasuoka K, Narumi T. Takahashi K, et al. Among authors: yasuoka k. J Chem Phys. 2007 Sep 21;127(11):114511. doi: 10.1063/1.2775929. J Chem Phys. 2007. PMID: 17887861

8

Extended study of molecular dynamics simulation of homogeneous vapor-liquid nucleation of water.

Matsubara H, Koishi T, Ebisuzaki T, Yasuoka K. Matsubara H, et al. Among authors: yasuoka k. J Chem Phys. 2007 Dec 7;127(21):214507. doi: 10.1063/1.2803899. J Chem Phys. 2007. PMID: 18067364

9

Microscopic insights into nucleation in a sulfuric acid-water vapor mixture based on molecular dynamics simulation.

Matsubara H, Ebisuzaki T, Yasuoka K. Matsubara H, et al. Among authors: yasuoka k. J Chem Phys. 2009 Mar 14;130(10):104705. doi: 10.1063/1.3082079. J Chem Phys. 2009. PMID: 19292547

10

Current performance gains from utilizing the GPU or the ASIC MDGRAPE-3 within an enhanced Poisson Boltzmann approach.

Narumi T, Yasuoka K, Taiji M, Höfinger S. Narumi T, et al. Among authors: yasuoka k. J Comput Chem. 2009 Nov 15;30(14):2351-7. doi: 10.1002/jcc.21257. J Comput Chem. 2009. PMID: 19350574

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