Vajda S - Search Results

1

ClusPro: an automated docking and discrimination method for the prediction of protein complexes.

Comeau SR, Gatchell DW, Vajda S, Camacho CJ. Comeau SR, et al. Among authors: vajda s. Bioinformatics. 2004 Jan 1;20(1):45-50. doi: 10.1093/bioinformatics/btg371. Bioinformatics. 2004. PMID: 14693807

2

Empirical free energy as a target function in docking and design: application to HIV-1 protease inhibitors.

King BL, Vajda S, DeLisi C. King BL, et al. Among authors: vajda s. FEBS Lett. 1996 Apr 8;384(1):87-91. doi: 10.1016/0014-5793(96)00276-1. FEBS Lett. 1996. PMID: 8797810 Free article.

3

Prediction of protein complexes using empirical free energy functions.

Weng Z, Vajda S, Delisi C. Weng Z, et al. Among authors: vajda s. Protein Sci. 1996 Apr;5(4):614-26. doi: 10.1002/pro.5560050406. Protein Sci. 1996. PMID: 8845751 Free PMC article.

4

Empirical potentials and functions for protein folding and binding.

Vajda S, Sippl M, Novotny J. Vajda S, et al. Curr Opin Struct Biol. 1997 Apr;7(2):222-8. doi: 10.1016/s0959-440x(97)80029-2. Curr Opin Struct Biol. 1997. PMID: 9094333 Free article. Review.

5

Free energy landscapes of encounter complexes in protein-protein association.

Camacho CJ, Weng Z, Vajda S, DeLisi C. Camacho CJ, et al. Among authors: vajda s. Biophys J. 1999 Mar;76(3):1166-78. doi: 10.1016/S0006-3495(99)77281-4. Biophys J. 1999. PMID: 10049302 Free PMC article.

6

Continuum electrostatic analysis of preferred solvation sites around proteins in solution.

Dennis S, Camacho CJ, Vajda S. Dennis S, et al. Among authors: vajda s. Proteins. 2000 Feb 1;38(2):176-88. Proteins. 2000. PMID: 10656264

7

Kinetics of desolvation-mediated protein-protein binding.

Camacho CJ, Kimura SR, DeLisi C, Vajda S. Camacho CJ, et al. Among authors: vajda s. Biophys J. 2000 Mar;78(3):1094-105. doi: 10.1016/S0006-3495(00)76668-9. Biophys J. 2000. PMID: 10692300 Free PMC article.

8

Scoring docked conformations generated by rigid-body protein-protein docking.

Camacho CJ, Gatchell DW, Kimura SR, Vajda S. Camacho CJ, et al. Among authors: vajda s. Proteins. 2000 Aug 15;40(3):525-37. doi: 10.1002/1097-0134(20000815)40:3<525::aid-prot190>3.0.co;2-f. Proteins. 2000. PMID: 10861944

9

Discrimination of near-native protein structures from misfolded models by empirical free energy functions.

Gatchell DW, Dennis S, Vajda S. Gatchell DW, et al. Among authors: vajda s. Proteins. 2000 Dec 1;41(4):518-34. Proteins. 2000. PMID: 11056039

10

Dynamical view of the positions of key side chains in protein-protein recognition.

Kimura SR, Brower RC, Vajda S, Camacho CJ. Kimura SR, et al. Among authors: vajda s. Biophys J. 2001 Feb;80(2):635-42. doi: 10.1016/S0006-3495(01)76044-4. Biophys J. 2001. PMID: 11159432 Free PMC article.

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