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The HUPO PSI's molecular interaction format--a community standard for the representation of protein interaction data.
Hermjakob H, Montecchi-Palazzi L, Bader G, Wojcik J, Salwinski L, Ceol A, Moore S, Orchard S, Sarkans U, von Mering C, Roechert B, Poux S, Jung E, Mersch H, Kersey P, Lappe M, Li Y, Zeng R, Rana D, Nikolski M, Husi H, Brun C, Shanker K, Grant SG, Sander C, Bork P, Zhu W, Pandey A, Brazma A, Jacq B, Vidal M, Sherman D, Legrain P, Cesareni G, Xenarios I, Eisenberg D, Steipe B, Hogue C, Apweiler R. Hermjakob H, et al. Among authors: shanker k. Nat Biotechnol. 2004 Feb;22(2):177-83. doi: 10.1038/nbt926. Nat Biotechnol. 2004. PMID: 14755292
TAGmapper: a web-based tool for mapping SAGE tags.
Bala P, Georgantas RW 3rd, Sudhir D, Suresh M, Shanker K, Vrushabendra BM, Civin CI, Pandey A. Bala P, et al. Among authors: shanker k. Gene. 2005 Dec 30;364:123-9. doi: 10.1016/j.gene.2005.05.044. Epub 2005 Aug 19. Gene. 2005. PMID: 16112519
BioBuilder as a database development and functional annotation platform for proteins.
Navarro JD, Talreja N, Peri S, Vrushabendra BM, Rashmi BP, Padma N, Surendranath V, Jonnalagadda CK, Kousthub PS, Deshpande N, Shanker K, Pandey A. Navarro JD, et al. Among authors: shanker k. BMC Bioinformatics. 2004 Apr 20;5:43. doi: 10.1186/1471-2105-5-43. BMC Bioinformatics. 2004. PMID: 15099404 Free PMC article.
Human protein reference database as a discovery resource for proteomics.
Peri S, Navarro JD, Kristiansen TZ, Amanchy R, Surendranath V, Muthusamy B, Gandhi TK, Chandrika KN, Deshpande N, Suresh S, Rashmi BP, Shanker K, Padma N, Niranjan V, Harsha HC, Talreja N, Vrushabendra BM, Ramya MA, Yatish AJ, Joy M, Shivashankar HN, Kavitha MP, Menezes M, Choudhury DR, Ghosh N, Saravana R, Chandran S, Mohan S, Jonnalagadda CK, Prasad CK, Kumar-Sinha C, Deshpande KS, Pandey A. Peri S, et al. Among authors: shanker k. Nucleic Acids Res. 2004 Jan 1;32(Database issue):D497-501. doi: 10.1093/nar/gkh070. Nucleic Acids Res. 2004. PMID: 14681466 Free PMC article.
Development of human protein reference database as an initial platform for approaching systems biology in humans.
Peri S, Navarro JD, Amanchy R, Kristiansen TZ, Jonnalagadda CK, Surendranath V, Niranjan V, Muthusamy B, Gandhi TK, Gronborg M, Ibarrola N, Deshpande N, Shanker K, Shivashankar HN, Rashmi BP, Ramya MA, Zhao Z, Chandrika KN, Padma N, Harsha HC, Yatish AJ, Kavitha MP, Menezes M, Choudhury DR, Suresh S, Ghosh N, Saravana R, Chandran S, Krishna S, Joy M, Anand SK, Madavan V, Joseph A, Wong GW, Schiemann WP, Constantinescu SN, Huang L, Khosravi-Far R, Steen H, Tewari M, Ghaffari S, Blobe GC, Dang CV, Garcia JG, Pevsner J, Jensen ON, Roepstorff P, Deshpande KS, Chinnaiyan AM, Hamosh A, Chakravarti A, Pandey A. Peri S, et al. Among authors: shanker k. Genome Res. 2003 Oct;13(10):2363-71. doi: 10.1101/gr.1680803. Genome Res. 2003. PMID: 14525934 Free PMC article.
A manually curated functional annotation of the human X chromosome.
Harsha HC, Suresh S, Amanchy R, Deshpande N, Shanker K, Yatish AJ, Muthusamy B, Vrushabendra BM, Rashmi BP, Chandrika KN, Padma N, Sharma S, Badano JL, Ramya MA, Shivashankar HN, Peri S, Choudhury DR, Kavitha MP, Saravana R, Niranjan V, Gandhi TK, Ghosh N, Chandran S, Menezes M, Joy M, Mohan SS, Katsanis N, Deshpande KS, Raghothama C, Prasad CK, Pandey A. Harsha HC, et al. Among authors: shanker k. Nat Genet. 2005 Apr;37(4):331-2. doi: 10.1038/ng0405-331. Nat Genet. 2005. PMID: 15800640 No abstract available.
310 results