Crooks GE - Search Results

1

Protein secondary structure: entropy, correlations and prediction.

Crooks GE, Brenner SE. Crooks GE, et al. Bioinformatics. 2004 Jul 10;20(10):1603-11. doi: 10.1093/bioinformatics/bth132. Epub 2004 Feb 26. Bioinformatics. 2004. PMID: 14988117

2

Measurements of protein sequence-structure correlations.

Crooks GE, Wolfe J, Brenner SE. Crooks GE, et al. Proteins. 2004 Dec 1;57(4):804-10. doi: 10.1002/prot.20262. Proteins. 2004. PMID: 15476257

3

An alternative model of amino acid replacement.

Crooks GE, Brenner SE. Crooks GE, et al. Bioinformatics. 2005 Apr 1;21(7):975-80. doi: 10.1093/bioinformatics/bti109. Epub 2004 Nov 5. Bioinformatics. 2005. PMID: 15531614

4

A generalized affine gap model significantly improves protein sequence alignment accuracy.

Zachariah MA, Crooks GE, Holbrook SR, Brenner SE. Zachariah MA, et al. Among authors: crooks ge. Proteins. 2005 Feb 1;58(2):329-38. doi: 10.1002/prot.20299. Proteins. 2005. PMID: 15562515

5

Statistical evaluation of pairwise protein sequence comparison with the Bayesian bootstrap.

Price GA, Crooks GE, Green RE, Brenner SE. Price GA, et al. Among authors: crooks ge. Bioinformatics. 2005 Oct 15;21(20):3824-31. doi: 10.1093/bioinformatics/bti627. Epub 2005 Aug 16. Bioinformatics. 2005. PMID: 16105900

6

Pairwise alignment incorporating dipeptide covariation.

Crooks GE, Green RE, Brenner SE. Crooks GE, et al. Bioinformatics. 2005 Oct 1;21(19):3704-10. doi: 10.1093/bioinformatics/bti616. Epub 2005 Aug 25. Bioinformatics. 2005. PMID: 16123116

7

WebLogo: a sequence logo generator.

Crooks GE, Hon G, Chandonia JM, Brenner SE. Crooks GE, et al. Genome Res. 2004 Jun;14(6):1188-90. doi: 10.1101/gr.849004. Genome Res. 2004. PMID: 15173120 Free PMC article.

8

Near-equilibrium measurements of nonequilibrium free energy.

Sivak DA, Crooks GE. Sivak DA, et al. Among authors: crooks ge. Phys Rev Lett. 2012 Apr 13;108(15):150601. doi: 10.1103/PhysRevLett.108.150601. Epub 2012 Apr 9. Phys Rev Lett. 2012. PMID: 22587237

9

Time step rescaling recovers continuous-time dynamical properties for discrete-time Langevin integration of nonequilibrium systems.

Sivak DA, Chodera JD, Crooks GE. Sivak DA, et al. Among authors: crooks ge. J Phys Chem B. 2014 Jun 19;118(24):6466-74. doi: 10.1021/jp411770f. Epub 2014 Mar 17. J Phys Chem B. 2014. PMID: 24555448 Free PMC article.

10

Mesostructure of polymer collapse and fractal smoothing.

Crooks GE, Ostrovsky B, Bar-Yam Y. Crooks GE, et al. Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics. 1999 Oct;60(4 Pt B):4559-63. doi: 10.1103/physreve.60.4559. Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics. 1999. PMID: 11970313

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