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A novel zinc-binding motif revealed by solution structures of DNA-binding domains of Arabidopsis SBP-family transcription factors.
Yamasaki K, Kigawa T, Inoue M, Tateno M, Yamasaki T, Yabuki T, Aoki M, Seki E, Matsuda T, Nunokawa E, Ishizuka Y, Terada T, Shirouzu M, Osanai T, Tanaka A, Seki M, Shinozaki K, Yokoyama S. Yamasaki K, et al. Among authors: matsuda t. J Mol Biol. 2004 Mar 12;337(1):49-63. doi: 10.1016/j.jmb.2004.01.015. J Mol Biol. 2004. PMID: 15001351
Solution structure of the B3 DNA binding domain of the Arabidopsis cold-responsive transcription factor RAV1.
Yamasaki K, Kigawa T, Inoue M, Tateno M, Yamasaki T, Yabuki T, Aoki M, Seki E, Matsuda T, Tomo Y, Hayami N, Terada T, Shirouzu M, Osanai T, Tanaka A, Seki M, Shinozaki K, Yokoyama S. Yamasaki K, et al. Among authors: matsuda t. Plant Cell. 2004 Dec;16(12):3448-59. doi: 10.1105/tpc.104.026112. Epub 2004 Nov 17. Plant Cell. 2004. PMID: 15548737 Free PMC article.
Solution structure of an Arabidopsis WRKY DNA binding domain.
Yamasaki K, Kigawa T, Inoue M, Tateno M, Yamasaki T, Yabuki T, Aoki M, Seki E, Matsuda T, Tomo Y, Hayami N, Terada T, Shirouzu M, Tanaka A, Seki M, Shinozaki K, Yokoyama S. Yamasaki K, et al. Among authors: matsuda t. Plant Cell. 2005 Mar;17(3):944-56. doi: 10.1105/tpc.104.026435. Epub 2005 Feb 10. Plant Cell. 2005. PMID: 15705956 Free PMC article.
Structural and functional differences of SWIRM domain subtypes.
Yoneyama M, Tochio N, Umehara T, Koshiba S, Inoue M, Yabuki T, Aoki M, Seki E, Matsuda T, Watanabe S, Tomo Y, Nishimura Y, Harada T, Terada T, Shirouzu M, Hayashizaki Y, Ohara O, Tanaka A, Kigawa T, Yokoyama S. Yoneyama M, et al. Among authors: matsuda t. J Mol Biol. 2007 May 25;369(1):222-38. doi: 10.1016/j.jmb.2007.03.027. Epub 2007 Mar 19. J Mol Biol. 2007. PMID: 17428495
Solution structure of the SEA domain from the murine homologue of ovarian cancer antigen CA125 (MUC16).
Maeda T, Inoue M, Koshiba S, Yabuki T, Aoki M, Nunokawa E, Seki E, Matsuda T, Motoda Y, Kobayashi A, Hiroyasu F, Shirouzu M, Terada T, Hayami N, Ishizuka Y, Shinya N, Tatsuguchi A, Yoshida M, Hirota H, Matsuo Y, Tani K, Arakawa T, Carninci P, Kawai J, Hayashizaki Y, Kigawa T, Yokoyama S. Maeda T, et al. Among authors: matsuda t. J Biol Chem. 2004 Mar 26;279(13):13174-82. doi: 10.1074/jbc.M309417200. Epub 2004 Feb 4. J Biol Chem. 2004. PMID: 14764598 Free article.
Solution structure of the RWD domain of the mouse GCN2 protein.
Nameki N, Yoneyama M, Koshiba S, Tochio N, Inoue M, Seki E, Matsuda T, Tomo Y, Harada T, Saito K, Kobayashi N, Yabuki T, Aoki M, Nunokawa E, Matsuda N, Sakagami N, Terada T, Shirouzu M, Yoshida M, Hirota H, Osanai T, Tanaka A, Arakawa T, Carninci P, Kawai J, Hayashizaki Y, Kinoshita K, Güntert P, Kigawa T, Yokoyama S. Nameki N, et al. Among authors: matsuda t, matsuda n. Protein Sci. 2004 Aug;13(8):2089-100. doi: 10.1110/ps.04751804. Protein Sci. 2004. PMID: 15273307 Free PMC article.
The CAP-Gly domain of CYLD associates with the proline-rich sequence in NEMO/IKKgamma.
Saito K, Kigawa T, Koshiba S, Sato K, Matsuo Y, Sakamoto A, Takagi T, Shirouzu M, Yabuki T, Nunokawa E, Seki E, Matsuda T, Aoki M, Miyata Y, Hirakawa N, Inoue M, Terada T, Nagase T, Kikuno R, Nakayama M, Ohara O, Tanaka A, Yokoyama S. Saito K, et al. Among authors: matsuda t. Structure. 2004 Sep;12(9):1719-28. doi: 10.1016/j.str.2004.07.012. Structure. 2004. PMID: 15341735 Free article.
Solution structure of the PWWP domain of the hepatoma-derived growth factor family.
Nameki N, Tochio N, Koshiba S, Inoue M, Yabuki T, Aoki M, Seki E, Matsuda T, Fujikura Y, Saito M, Ikari M, Watanabe M, Terada T, Shirouzu M, Yoshida M, Hirota H, Tanaka A, Hayashizaki Y, Güntert P, Kigawa T, Yokoyama S. Nameki N, et al. Among authors: matsuda t. Protein Sci. 2005 Mar;14(3):756-64. doi: 10.1110/ps.04975305. Epub 2005 Feb 2. Protein Sci. 2005. PMID: 15689505 Free PMC article.
5,265 results