Bashford D - Search Results

1

Exploring protein native states and large-scale conformational changes with a modified generalized born model.

Onufriev A, Bashford D, Case DA. Onufriev A, et al. Among authors: bashford d. Proteins. 2004 May 1;55(2):383-94. doi: 10.1002/prot.20033. Proteins. 2004. PMID: 15048829

2

Effective Born radii in the generalized Born approximation: the importance of being perfect.

Onufriev A, Case DA, Bashford D. Onufriev A, et al. Among authors: bashford d. J Comput Chem. 2002 Nov 15;23(14):1297-304. doi: 10.1002/jcc.10126. J Comput Chem. 2002. PMID: 12214312

3

Generalized born models of macromolecular solvation effects.

Bashford D, Case DA. Bashford D, et al. Annu Rev Phys Chem. 2000;51:129-52. doi: 10.1146/annurev.physchem.51.1.129. Annu Rev Phys Chem. 2000. PMID: 11031278 Review.

4

Structural details, pathways, and energetics of unfolding apomyoglobin.

Onufriev A, Case DA, Bashford D. Onufriev A, et al. Among authors: bashford d. J Mol Biol. 2003 Jan 17;325(3):555-67. doi: 10.1016/s0022-2836(02)01207-x. J Mol Biol. 2003. PMID: 12498802

5

Thermodynamics of a reverse turn motif. Solvent effects and side-chain packing.

Demchuk E, Bashford D, Gippert GP, Case DA. Demchuk E, et al. Among authors: bashford d. J Mol Biol. 1997 Jul 11;270(2):305-17. doi: 10.1006/jmbi.1997.1103. J Mol Biol. 1997. PMID: 9236131

6

Proton affinity changes driving unidirectional proton transport in the bacteriorhodopsin photocycle.

Onufriev A, Smondyrev A, Bashford D. Onufriev A, et al. Among authors: bashford d. J Mol Biol. 2003 Oct 3;332(5):1183-93. doi: 10.1016/s0022-2836(03)00903-3. J Mol Biol. 2003. PMID: 14499620

7

Dynamics of a type VI reverse turn in a linear peptide in aqueous solution.

Demchuk E, Bashford D, Case DA. Demchuk E, et al. Among authors: bashford d. Fold Des. 1997;2(1):35-46. doi: 10.1016/S1359-0278(97)00004-7. Fold Des. 1997. PMID: 9080197

8

Electrostatic calculations of side-chain pK(a) values in myoglobin and comparison with NMR data for histidines.

Bashford D, Case DA, Dalvit C, Tennant L, Wright PE. Bashford D, et al. Biochemistry. 1993 Aug 10;32(31):8045-56. doi: 10.1021/bi00082a027. Biochemistry. 1993. PMID: 8347606

9

Solvation energy density occlusion approximation for evaluation of desolvation penalties in biomolecular interactions.

Arora N, Bashford D. Arora N, et al. Among authors: bashford d. Proteins. 2001 Apr 1;43(1):12-27. doi: 10.1002/1097-0134(20010401)43:1<12::aid-prot1013>3.0.co;2-7. Proteins. 2001. PMID: 11170210

10

Diffusion-collision model for the folding kinetics of myoglobin.

Bashford D, Cohen FE, Karplus M, Kuntz ID, Weaver DL. Bashford D, et al. Proteins. 1988;4(3):211-27. doi: 10.1002/prot.340040308. Proteins. 1988. PMID: 3237719

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