Sidow A - Search Results

1

Automated whole-genome multiple alignment of rat, mouse, and human.

Brudno M, Poliakov A, Salamov A, Cooper GM, Sidow A, Rubin EM, Solovyev V, Batzoglou S, Dubchak I. Brudno M, et al. Among authors: sidow a. Genome Res. 2004 Apr;14(4):685-92. doi: 10.1101/gr.2067704. Genome Res. 2004. PMID: 15060011 Free PMC article.

2

Characterization of evolutionary rates and constraints in three Mammalian genomes.

Cooper GM, Brudno M, Stone EA, Dubchak I, Batzoglou S, Sidow A. Cooper GM, et al. Among authors: sidow a. Genome Res. 2004 Apr;14(4):539-48. doi: 10.1101/gr.2034704. Genome Res. 2004. PMID: 15059994 Free PMC article.

3

Distribution and intensity of constraint in mammalian genomic sequence.

Cooper GM, Stone EA, Asimenos G; NISC Comparative Sequencing Program; Green ED, Batzoglou S, Sidow A. Cooper GM, et al. Among authors: sidow a. Genome Res. 2005 Jul;15(7):901-13. doi: 10.1101/gr.3577405. Epub 2005 Jun 17. Genome Res. 2005. PMID: 15965027 Free PMC article.

4

A haplome alignment and reference sequence of the highly polymorphic Ciona savignyi genome.

Small KS, Brudno M, Hill MM, Sidow A. Small KS, et al. Among authors: sidow a. Genome Biol. 2007;8(3):R41. doi: 10.1186/gb-2007-8-3-r41. Genome Biol. 2007. PMID: 17374142 Free PMC article.

5

Evolutionary constraint facilitates interpretation of genetic variation in resequenced human genomes.

Goode DL, Cooper GM, Schmutz J, Dickson M, Gonzales E, Tsai M, Karra K, Davydov E, Batzoglou S, Myers RM, Sidow A. Goode DL, et al. Among authors: sidow a. Genome Res. 2010 Mar;20(3):301-10. doi: 10.1101/gr.102210.109. Epub 2010 Jan 12. Genome Res. 2010. PMID: 20067941 Free PMC article.

6

Identifying a high fraction of the human genome to be under selective constraint using GERP++.

Davydov EV, Goode DL, Sirota M, Cooper GM, Sidow A, Batzoglou S. Davydov EV, et al. Among authors: sidow a. PLoS Comput Biol. 2010 Dec 2;6(12):e1001025. doi: 10.1371/journal.pcbi.1001025. PLoS Comput Biol. 2010. PMID: 21152010 Free PMC article.

7

LAGAN and Multi-LAGAN: efficient tools for large-scale multiple alignment of genomic DNA.

Brudno M, Do CB, Cooper GM, Kim MF, Davydov E; NISC Comparative Sequencing Program; Green ED, Sidow A, Batzoglou S. Brudno M, et al. Among authors: sidow a. Genome Res. 2003 Apr;13(4):721-31. doi: 10.1101/gr.926603. Epub 2003 Mar 12. Genome Res. 2003. PMID: 12654723 Free PMC article.

8

Quantitative estimates of sequence divergence for comparative analyses of mammalian genomes.

Cooper GM, Brudno M; NISC Comparative Sequencing Program; Green ED, Batzoglou S, Sidow A. Cooper GM, et al. Among authors: sidow a. Genome Res. 2003 May;13(5):813-20. doi: 10.1101/gr.1064503. Genome Res. 2003. PMID: 12727901 Free PMC article.

9

Read clouds uncover variation in complex regions of the human genome.

Bishara A, Liu Y, Weng Z, Kashef-Haghighi D, Newburger DE, West R, Sidow A, Batzoglou S. Bishara A, et al. Among authors: sidow a. Genome Res. 2015 Oct;25(10):1570-80. doi: 10.1101/gr.191189.115. Epub 2015 Aug 18. Genome Res. 2015. PMID: 26286554 Free PMC article.

10

ABC: software for interactive browsing of genomic multiple sequence alignment data.

Cooper GM, Singaravelu SA, Sidow A. Cooper GM, et al. Among authors: sidow a. BMC Bioinformatics. 2004 Dec 8;5:192. doi: 10.1186/1471-2105-5-192. BMC Bioinformatics. 2004. PMID: 15588288 Free PMC article.

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