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Automated 3D structure composition for large RNAs.
Popenda M, Szachniuk M, Antczak M, Purzycka KJ, Lukasiak P, Bartol N, Blazewicz J, Adamiak RW. Popenda M, et al. Among authors: szachniuk m. Nucleic Acids Res. 2012 Aug;40(14):e112. doi: 10.1093/nar/gks339. Epub 2012 Apr 26. Nucleic Acids Res. 2012. PMID: 22539264 Free PMC article.
RNAlyzer--novel approach for quality analysis of RNA structural models.
Lukasiak P, Antczak M, Ratajczak T, Bujnicki JM, Szachniuk M, Adamiak RW, Popenda M, Blazewicz J. Lukasiak P, et al. Among authors: szachniuk m. Nucleic Acids Res. 2013 Jul;41(12):5978-90. doi: 10.1093/nar/gkt318. Epub 2013 Apr 25. Nucleic Acids Res. 2013. PMID: 23620294 Free PMC article.
Sorting signal targeting mRNA into hepatic extracellular vesicles.
Szostak N, Royo F, Rybarczyk A, Szachniuk M, Blazewicz J, del Sol A, Falcon-Perez JM. Szostak N, et al. Among authors: szachniuk m. RNA Biol. 2014;11(7):836-44. doi: 10.4161/rna.29305. Epub 2014 Jun 12. RNA Biol. 2014. PMID: 24921245 Free PMC article.
RNA-Puzzles Round II: assessment of RNA structure prediction programs applied to three large RNA structures.
Miao Z, Adamiak RW, Blanchet MF, Boniecki M, Bujnicki JM, Chen SJ, Cheng C, Chojnowski G, Chou FC, Cordero P, Cruz JA, Ferré-D'Amaré AR, Das R, Ding F, Dokholyan NV, Dunin-Horkawicz S, Kladwang W, Krokhotin A, Lach G, Magnus M, Major F, Mann TH, Masquida B, Matelska D, Meyer M, Peselis A, Popenda M, Purzycka KJ, Serganov A, Stasiewicz J, Szachniuk M, Tandon A, Tian S, Wang J, Xiao Y, Xu X, Zhang J, Zhao P, Zok T, Westhof E. Miao Z, et al. Among authors: szachniuk m. RNA. 2015 Jun;21(6):1066-84. doi: 10.1261/rna.049502.114. Epub 2015 Apr 16. RNA. 2015. PMID: 25883046 Free PMC article.
50 results