Helmer-Citterich M - Search Results

1

A structural study for the optimisation of functional motifs encoded in protein sequences.

Via A, Helmer-Citterich M. Via A, et al. BMC Bioinformatics. 2004 Apr 30;5:50. doi: 10.1186/1471-2105-5-50. BMC Bioinformatics. 2004. PMID: 15119965 Free PMC article.

2

Three-dimensional profiles: a new tool to identify protein surface similarities.

de Rinaldis M, Ausiello G, Cesareni G, Helmer-Citterich M. de Rinaldis M, et al. J Mol Biol. 1998 Dec 11;284(4):1211-21. doi: 10.1006/jmbi.1998.2248. J Mol Biol. 1998. PMID: 9837739

3

SH3-SPOT: an algorithm to predict preferred ligands to different members of the SH3 gene family.

Brannetti B, Via A, Cestra G, Cesareni G, Helmer-Citterich M. Brannetti B, et al. J Mol Biol. 2000 Apr 28;298(2):313-28. doi: 10.1006/jmbi.2000.3670. J Mol Biol. 2000. PMID: 10764600

4

Three-dimensional view of the surface motif associated with the P-loop structure: cis and trans cases of convergent evolution.

Via A, Ferrè F, Brannetti B, Valencia A, Helmer-Citterich M. Via A, et al. J Mol Biol. 2000 Nov 3;303(4):455-65. doi: 10.1006/jmbi.2000.4151. J Mol Biol. 2000. PMID: 11054283

5

Protein surface similarities: a survey of methods to describe and compare protein surfaces.

Via A, Ferrè F, Brannetti B, Helmer-Citterich M. Via A, et al. Cell Mol Life Sci. 2000 Dec;57(13-14):1970-7. doi: 10.1007/PL00000677. Cell Mol Life Sci. 2000. PMID: 11215522 Free PMC article. Review.

6

MINT: a Molecular INTeraction database.

Zanzoni A, Montecchi-Palazzi L, Quondam M, Ausiello G, Helmer-Citterich M, Cesareni G. Zanzoni A, et al. FEBS Lett. 2002 Feb 20;513(1):135-40. doi: 10.1016/s0014-5793(01)03293-8. FEBS Lett. 2002. PMID: 11911893 Free article. Review.

7

ELM server: A new resource for investigating short functional sites in modular eukaryotic proteins.

Puntervoll P, Linding R, Gemünd C, Chabanis-Davidson S, Mattingsdal M, Cameron S, Martin DM, Ausiello G, Brannetti B, Costantini A, Ferrè F, Maselli V, Via A, Cesareni G, Diella F, Superti-Furga G, Wyrwicz L, Ramu C, McGuigan C, Gudavalli R, Letunic I, Bork P, Rychlewski L, Küster B, Helmer-Citterich M, Hunter WN, Aasland R, Gibson TJ. Puntervoll P, et al. Nucleic Acids Res. 2003 Jul 1;31(13):3625-30. doi: 10.1093/nar/gkg545. Nucleic Acids Res. 2003. PMID: 12824381 Free PMC article.

8

SURFACE: a database of protein surface regions for functional annotation.

Ferrè F, Ausiello G, Zanzoni A, Helmer-Citterich M. Ferrè F, et al. Nucleic Acids Res. 2004 Jan 1;32(Database issue):D240-4. doi: 10.1093/nar/gkh054. Nucleic Acids Res. 2004. PMID: 14681403 Free PMC article.

9

Seq2Struct: a resource for establishing sequence-structure links.

Via A, Zanzoni A, Helmer-Citterich M. Via A, et al. Bioinformatics. 2005 Feb 15;21(4):551-3. doi: 10.1093/bioinformatics/bti049. Epub 2004 Sep 28. Bioinformatics. 2005. PMID: 15454411

10

pdbFun: mass selection and fast comparison of annotated PDB residues.

Ausiello G, Zanzoni A, Peluso D, Via A, Helmer-Citterich M. Ausiello G, et al. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W133-7. doi: 10.1093/nar/gki499. Nucleic Acids Res. 2005. PMID: 15980442 Free PMC article.

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