Ben-Tal N - Search Results

1

Comparison of site-specific rate-inference methods for protein sequences: empirical Bayesian methods are superior.

Mayrose I, Graur D, Ben-Tal N, Pupko T. Mayrose I, et al. Mol Biol Evol. 2004 Sep;21(9):1781-91. doi: 10.1093/molbev/msh194. Epub 2004 Jun 16. Mol Biol Evol. 2004. PMID: 15201400

2

ConSurf: an algorithmic tool for the identification of functional regions in proteins by surface mapping of phylogenetic information.

Armon A, Graur D, Ben-Tal N. Armon A, et al. J Mol Biol. 2001 Mar 16;307(1):447-63. doi: 10.1006/jmbi.2000.4474. J Mol Biol. 2001. PMID: 11243830

3

A novel scoring function for predicting the conformations of tightly packed pairs of transmembrane alpha-helices.

Fleishman SJ, Ben-Tal N. Fleishman SJ, et al. J Mol Biol. 2002 Aug 9;321(2):363-78. doi: 10.1016/s0022-2836(02)00590-9. J Mol Biol. 2002. PMID: 12144792

4

Rate4Site: an algorithmic tool for the identification of functional regions in proteins by surface mapping of evolutionary determinants within their homologues.

Pupko T, Bell RE, Mayrose I, Glaser F, Ben-Tal N. Pupko T, et al. Bioinformatics. 2002;18 Suppl 1:S71-7. doi: 10.1093/bioinformatics/18.suppl_1.s71. Bioinformatics. 2002. PMID: 12169533

5

ConSurf: identification of functional regions in proteins by surface-mapping of phylogenetic information.

Glaser F, Pupko T, Paz I, Bell RE, Bechor-Shental D, Martz E, Ben-Tal N. Glaser F, et al. Bioinformatics. 2003 Jan;19(1):163-4. doi: 10.1093/bioinformatics/19.1.163. Bioinformatics. 2003. PMID: 12499312

6

ConSeq: the identification of functionally and structurally important residues in protein sequences.

Berezin C, Glaser F, Rosenberg J, Paz I, Pupko T, Fariselli P, Casadio R, Ben-Tal N. Berezin C, et al. Bioinformatics. 2004 May 22;20(8):1322-4. doi: 10.1093/bioinformatics/bth070. Epub 2004 Feb 10. Bioinformatics. 2004. PMID: 14871869

7

An evolutionarily conserved network of amino acids mediates gating in voltage-dependent potassium channels.

Fleishman SJ, Yifrach O, Ben-Tal N. Fleishman SJ, et al. J Mol Biol. 2004 Jul 2;340(2):307-18. doi: 10.1016/j.jmb.2004.04.064. J Mol Biol. 2004. PMID: 15201054

8

The conserved carboxy terminus of the capsid domain of human immunodeficiency virus type 1 gag protein is important for virion assembly and release.

Melamed D, Mark-Danieli M, Kenan-Eichler M, Kraus O, Castiel A, Laham N, Pupko T, Glaser F, Ben-Tal N, Bacharach E. Melamed D, et al. J Virol. 2004 Sep;78(18):9675-88. doi: 10.1128/JVI.78.18.9675-9688.2004. J Virol. 2004. PMID: 15331700 Free PMC article.

9

The ConSurf-HSSP database: the mapping of evolutionary conservation among homologs onto PDB structures.

Glaser F, Rosenberg Y, Kessel A, Pupko T, Ben-Tal N. Glaser F, et al. Proteins. 2005 Feb 15;58(3):610-7. doi: 10.1002/prot.20305. Proteins. 2005. PMID: 15614759

10

In silico identification of functional regions in proteins.

Nimrod G, Glaser F, Steinberg D, Ben-Tal N, Pupko T. Nimrod G, et al. Bioinformatics. 2005 Jun;21 Suppl 1:i328-37. doi: 10.1093/bioinformatics/bti1023. Bioinformatics. 2005. PMID: 15961475

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