Graur D - Search Results

1

Comparison of site-specific rate-inference methods for protein sequences: empirical Bayesian methods are superior.

Mayrose I, Graur D, Ben-Tal N, Pupko T. Mayrose I, et al. Among authors: graur d. Mol Biol Evol. 2004 Sep;21(9):1781-91. doi: 10.1093/molbev/msh194. Epub 2004 Jun 16. Mol Biol Evol. 2004. PMID: 15201400

2

An alignment confidence score capturing robustness to guide tree uncertainty.

Penn O, Privman E, Landan G, Graur D, Pupko T. Penn O, et al. Among authors: graur d. Mol Biol Evol. 2010 Aug;27(8):1759-67. doi: 10.1093/molbev/msq066. Epub 2010 Mar 5. Mol Biol Evol. 2010. PMID: 20207713 Free PMC article.

3

A fast algorithm for joint reconstruction of ancestral amino acid sequences.

Pupko T, Pe'er I, Shamir R, Graur D. Pupko T, et al. Among authors: graur d. Mol Biol Evol. 2000 Jun;17(6):890-6. doi: 10.1093/oxfordjournals.molbev.a026369. Mol Biol Evol. 2000. PMID: 10833195

4

ConSurf: an algorithmic tool for the identification of functional regions in proteins by surface mapping of phylogenetic information.

Armon A, Graur D, Ben-Tal N. Armon A, et al. Among authors: graur d. J Mol Biol. 2001 Mar 16;307(1):447-63. doi: 10.1006/jmbi.2000.4474. J Mol Biol. 2001. PMID: 11243830

5

Evolution of microsatellites in the yeast Saccharomyces cerevisiae: role of length and number of repeated units.

Pupko T, Graur D. Pupko T, et al. Among authors: graur d. J Mol Evol. 1999 Mar;48(3):313-6. doi: 10.1007/pl00006474. J Mol Evol. 1999. PMID: 10093220

6

Detecting excess radical replacements in phylogenetic trees.

Pupko T, Sharan R, Hasegawa M, Shamir R, Graur D. Pupko T, et al. Among authors: graur d. Gene. 2003 Nov 13;319:127-35. doi: 10.1016/s0378-1119(03)00802-3. Gene. 2003. PMID: 14597178

7

GUIDANCE: a web server for assessing alignment confidence scores.

Penn O, Privman E, Ashkenazy H, Landan G, Graur D, Pupko T. Penn O, et al. Among authors: graur d. Nucleic Acids Res. 2010 Jul;38(Web Server issue):W23-8. doi: 10.1093/nar/gkq443. Epub 2010 May 23. Nucleic Acids Res. 2010. PMID: 20497997 Free PMC article.

8

A branch-and-bound algorithm for the inference of ancestral amino-acid sequences when the replacement rate varies among sites: Application to the evolution of five gene families.

Pupko T, Pe'er I, Hasegawa M, Graur D, Friedman N. Pupko T, et al. Among authors: graur d. Bioinformatics. 2002 Aug;18(8):1116-23. doi: 10.1093/bioinformatics/18.8.1116. Bioinformatics. 2002. PMID: 12176835

9

The Permian bacterium that isn't.

Graur D, Pupko T. Graur D, et al. Mol Biol Evol. 2001 Jun;18(6):1143-6. doi: 10.1093/oxfordjournals.molbev.a003887. Mol Biol Evol. 2001. PMID: 11371604 No abstract available.

10

pANT: a method for the pairwise assessment of nonfunctionalization times of processed pseudogenes.

Fleishman SJ, Dagan T, Graur D. Fleishman SJ, et al. Among authors: graur d. Mol Biol Evol. 2003 Nov;20(11):1876-80. doi: 10.1093/molbev/msg202. Epub 2003 Jul 28. Mol Biol Evol. 2003. PMID: 12885960

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