Schwikowski B - Search Results

1

Predicting protein-peptide interactions via a network-based motif sampler.

Reiss DJ, Schwikowski B. Reiss DJ, et al. Among authors: schwikowski b. Bioinformatics. 2004 Aug 4;20 Suppl 1:i274-82. doi: 10.1093/bioinformatics/bth922. Bioinformatics. 2004. PMID: 15262809

2

Tools enabling the elucidation of molecular pathways active in human disease: application to Hepatitis C virus infection.

Reiss DJ, Avila-Campillo I, Thorsson V, Schwikowski B, Galitski T. Reiss DJ, et al. Among authors: schwikowski b. BMC Bioinformatics. 2005 Jun 20;6:154. doi: 10.1186/1471-2105-6-154. BMC Bioinformatics. 2005. PMID: 15967031 Free PMC article.

3

Discovering regulatory and signalling circuits in molecular interaction networks.

Ideker T, Ozier O, Schwikowski B, Siegel AF. Ideker T, et al. Among authors: schwikowski b. Bioinformatics. 2002;18 Suppl 1:S233-40. doi: 10.1093/bioinformatics/18.suppl_1.s233. Bioinformatics. 2002. PMID: 12169552

4

GOlorize: a Cytoscape plug-in for network visualization with Gene Ontology-based layout and coloring.

Garcia O, Saveanu C, Cline M, Fromont-Racine M, Jacquier A, Schwikowski B, Aittokallio T. Garcia O, et al. Among authors: schwikowski b. Bioinformatics. 2007 Feb 1;23(3):394-6. doi: 10.1093/bioinformatics/btl605. Epub 2006 Nov 24. Bioinformatics. 2007. PMID: 17127678

5

A network of protein-protein interactions in yeast.

Schwikowski B, Uetz P, Fields S. Schwikowski B, et al. Nat Biotechnol. 2000 Dec;18(12):1257-61. doi: 10.1038/82360. Nat Biotechnol. 2000. PMID: 11101803

6

ProbID: a probabilistic algorithm to identify peptides through sequence database searching using tandem mass spectral data.

Zhang N, Aebersold R, Schwikowski B. Zhang N, et al. Among authors: schwikowski b. Proteomics. 2002 Oct;2(10):1406-12. doi: 10.1002/1615-9861(200210)2:10<1406::AID-PROT1406>3.0.CO;2-9. Proteomics. 2002. PMID: 12422357

7

The Cyni framework for network inference in Cytoscape.

Guitart-Pla O, Kustagi M, Rügheimer F, Califano A, Schwikowski B. Guitart-Pla O, et al. Among authors: schwikowski b. Bioinformatics. 2015 May 1;31(9):1499-501. doi: 10.1093/bioinformatics/btu812. Epub 2014 Dec 18. Bioinformatics. 2015. PMID: 25527096 Free PMC article.

8

Cytoscape: a software environment for integrated models of biomolecular interaction networks.

Shannon P, Markiel A, Ozier O, Baliga NS, Wang JT, Ramage D, Amin N, Schwikowski B, Ideker T. Shannon P, et al. Among authors: schwikowski b. Genome Res. 2003 Nov;13(11):2498-504. doi: 10.1101/gr.1239303. Genome Res. 2003. PMID: 14597658 Free PMC article.

9

Network-based analysis of omics data: the LEAN method.

Gwinner F, Boulday G, Vandiedonck C, Arnould M, Cardoso C, Nikolayeva I, Guitart-Pla O, Denis CV, Christophe OD, Beghain J, Tournier-Lasserve E, Schwikowski B. Gwinner F, et al. Among authors: schwikowski b. Bioinformatics. 2017 Mar 1;33(5):701-709. doi: 10.1093/bioinformatics/btw676. Bioinformatics. 2017. PMID: 27797778 Free PMC article.

10

Graph-based methods for analysing networks in cell biology.

Aittokallio T, Schwikowski B. Aittokallio T, et al. Among authors: schwikowski b. Brief Bioinform. 2006 Sep;7(3):243-55. doi: 10.1093/bib/bbl022. Epub 2006 Jul 30. Brief Bioinform. 2006. PMID: 16880171 Review.

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