Brent MR - Search Results

1

Gene prediction and verification in a compact genome with numerous small introns.

Tenney AE, Brown RH, Vaske C, Lodge JK, Doering TL, Brent MR. Tenney AE, et al. Among authors: brent mr. Genome Res. 2004 Nov;14(11):2330-5. doi: 10.1101/gr.2816704. Epub 2004 Oct 12. Genome Res. 2004. PMID: 15479946 Free PMC article.

2

Integrating genomic homology into gene structure prediction.

Korf I, Flicek P, Duan D, Brent MR. Korf I, et al. Among authors: brent mr. Bioinformatics. 2001;17 Suppl 1:S140-8. doi: 10.1093/bioinformatics/17.suppl_1.s140. Bioinformatics. 2001. PMID: 11473003

3

Leveraging the mouse genome for gene prediction in human: from whole-genome shotgun reads to a global synteny map.

Flicek P, Keibler E, Hu P, Korf I, Brent MR. Flicek P, et al. Among authors: brent mr. Genome Res. 2003 Jan;13(1):46-54. doi: 10.1101/gr.830003. Genome Res. 2003. PMID: 12529305 Free PMC article.

4

Identification of rat genes by TWINSCAN gene prediction, RT-PCR, and direct sequencing.

Wu JQ, Shteynberg D, Arumugam M, Gibbs RA, Brent MR. Wu JQ, et al. Among authors: brent mr. Genome Res. 2004 Apr;14(4):665-71. doi: 10.1101/gr.1959604. Genome Res. 2004. PMID: 15060008 Free PMC article.

5

Recent advances in gene structure prediction.

Brent MR, Guigó R. Brent MR, et al. Curr Opin Struct Biol. 2004 Jun;14(3):264-72. doi: 10.1016/j.sbi.2004.05.007. Curr Opin Struct Biol. 2004. PMID: 15193305 Review.

6

The genome of the basidiomycetous yeast and human pathogen Cryptococcus neoformans.

Loftus BJ, Fung E, Roncaglia P, Rowley D, Amedeo P, Bruno D, Vamathevan J, Miranda M, Anderson IJ, Fraser JA, Allen JE, Bosdet IE, Brent MR, Chiu R, Doering TL, Donlin MJ, D'Souza CA, Fox DS, Grinberg V, Fu J, Fukushima M, Haas BJ, Huang JC, Janbon G, Jones SJ, Koo HL, Krzywinski MI, Kwon-Chung JK, Lengeler KB, Maiti R, Marra MA, Marra RE, Mathewson CA, Mitchell TG, Pertea M, Riggs FR, Salzberg SL, Schein JE, Shvartsbeyn A, Shin H, Shumway M, Specht CA, Suh BB, Tenney A, Utterback TR, Wickes BL, Wortman JR, Wye NH, Kronstad JW, Lodge JK, Heitman J, Davis RW, Fraser CM, Hyman RW. Loftus BJ, et al. Among authors: brent mr. Science. 2005 Feb 25;307(5713):1321-4. doi: 10.1126/science.1103773. Epub 2005 Jan 13. Science. 2005. PMID: 15653466 Free PMC article.

7

Closing in on the C. elegans ORFeome by cloning TWINSCAN predictions.

Wei C, Lamesch P, Arumugam M, Rosenberg J, Hu P, Vidal M, Brent MR. Wei C, et al. Among authors: brent mr. Genome Res. 2005 Apr;15(4):577-82. doi: 10.1101/gr.3329005. Genome Res. 2005. PMID: 15805498 Free PMC article.

8

Begin at the beginning: predicting genes with 5' UTRs.

Brown RH, Gross SS, Brent MR. Brown RH, et al. Among authors: brent mr. Genome Res. 2005 May;15(5):742-7. doi: 10.1101/gr.3696205. Genome Res. 2005. PMID: 15867435 Free PMC article.

9

Genome annotation past, present, and future: how to define an ORF at each locus.

Brent MR. Brent MR. Genome Res. 2005 Dec;15(12):1777-86. doi: 10.1101/gr.3866105. Genome Res. 2005. PMID: 16339376 Free article. Review.

10

Using multiple alignments to improve gene prediction.

Gross SS, Brent MR. Gross SS, et al. Among authors: brent mr. J Comput Biol. 2006 Mar;13(2):379-93. doi: 10.1089/cmb.2006.13.379. J Comput Biol. 2006. PMID: 16597247

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